Trematomus bernacchii (emerald rockcod): 117478926
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Entry
117478926 CDS
T09643
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04020
Calcium signaling pathway
tben04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117478926 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117478926 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117478926 (grin1a)
Ion channels [BR:
tben04040
]
Ligand-gated channels
Glutamate (ionotropic)
117478926 (grin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
117478926
NCBI-ProteinID:
XP_033981779
EnsemblRapid:
ENSTBNG00005010525
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MRLFLLAVLFWCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFNWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQDTNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPKGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKTRLVQVGIYNGTQVVMNNQRKIIWPGGETEKPQGFQMSTRLKIVT
IHQEPFVYVKPTQPDGTCHEEMTLNGVLIKKVICTGPNETIPGNLSGRPIVPQCCYGFCV
DLLIKLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKEVSGSQAMGGTPSL
PSSSLETQDDRKSGRAEPDPQKKASFRSISTNLASSIKRRRSSKDTQYPPTDITGQLNLS
DPSVSTVV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgttggcggtgctcttctggtgctcctgcgcgcgggccggctgtgag
ccgaagatcgtgaacatcggggcagtgctgagccagaagagatacgagcaggtcttcaaa
gatgccgtgacccaggccaaccaggtttatggaagagataaattcaagctgactgccatc
tccgtcacgcacaagcccaacgccatccagatggctctgtccgtgtgcgaggacctcatc
tccagtcaggtctacgctatcctggtgagtcaccctccccagtccaatgaccacctcact
ccaacgcctgtctcctacactgcgggcttctaccgcatccccgtggtggggctcaccacc
cgcatgtccatctactccgacaagagtatccacctgtcctttctgcggacagtccctccg
tactcccaccaggcgcacgtgtggttcgacttgatgcgagagttcaactggaaccacatc
atcctgatagtgagcgatgaccacgaggggcgcgctgctcaaaagaggctggagaccctg
ctggaggagagagaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggacactaac
ttaactgccctgctgctggaggccaaagagctggaggcccgcgtcatcatcctgtccgcc
agtgaggaggacgctgctgcagtgtacaaggctgcccgcttcctcaacatgacgggctcg
gggtacgtgtggctggtgggcgagcgggagatgtcgggtaaagccctgagcgaggcgcca
gacggtctgatcggcctccagctcatcaacgggaagaatgagtcggcgcatatcaatgat
gcggtggctgtggtggctcagtccatccaggagctctttgagaaggagaatatcactgaa
cccccaaaaggatgtgtgggcaacaccaacatctggaaaacagggccgctctttaaacgg
gttctgatgtcgtctaaataccccgagggcctcacaggtcgcgtggagttcaatgacgac
ggggacaggaagtacgcccattacagcatcctcaactaccagaagactcgactcgttcaa
gtcggcatttacaacggaacacaggtggtaatgaacaatcagcggaagatcatctggcct
ggaggagagacggagaaaccacagggcttccagatgtccactcgactaaagatagtgacg
attcaccaggagccatttgtgtatgtgaaaccaactcaaccggatggaacatgccacgag
gaaatgacattaaatggagtcttaataaaaaaggttatctgcactgggcccaatgagacc
atcccaggtaacctatcaggacgcccaattgttccccaatgttgttacggattctgtgtt
gatctccttatcaagttggctatgaccatgaacttcacctatgaggtgcacctggtggct
gatgggaaatttggaacacaggagcgggtgaacaacagtaacaagaaagagtggaatggc
atgatgggagagctcctggggggcctggctgacatgattgtagccccgctgactattaac
aacgaacgagcccagtacatcgaattctccaagccctttaaatatcaaggtctcaccatc
cttgttaaaaaggaaatacctcgcagtacactggactcgttcatgcagccgttccaaagc
acgctgtggctgctggtgggtctttcggtgcatgtggtggcggtgatgctttacctacta
gaccggttcagcccgtttggaagatttaaagtaaacagtgaagaagaagaagaagatgcc
ctcaccttatcatctgctatgtggttctcctggggagtgttgttgaactccggtattgga
gaaggtgcaccgcgtagcttctcagcgagaatcctaggtatggtgtgggccggatttgcc
atgataattgtggcatcctatactgccaacctggctgccttcctggtgttggaccgacct
gaggagcgcatcaccggcatcaatgacccaaggctgagaaacccatcggacaagttcatc
tacgccacggtgaagcagagctccgtggacatctacttccggcggcaggtggagcttagc
accatgtaccgccacatggagaagcacaactatgagagtgccgccgaggctatccaggct
gtgcgtgacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagct
tcgcagaagtgcgacctggtgactacgggagagctgtttttccgttcgggctttggcata
ggcatgcgcaaggacagcccctggaaacagaatgtgtccctggccattctcagttctcat
gagaatggcttcatggaagacctagataaaacctgggtgagataccaggagtgtgactca
aggagcaatgccccagccacactcacctttgaaaacatggcaggggtattcatgctggtg
gccggtgggattgcagcaggtatcttcctaatcttcattgaaatcgcctataagcgccat
aaagacgcccgcaggaagcagatgcagctggcctttgcggcggtcaatgtttggaggaag
aacctgcaggacagtaaggaggtctctggaagtcaagcgatgggagggaccccctcatta
ccctcttcctctctagagactcaggatgataggaaaagtggtagagcagagcccgacccc
caaaagaaagcctcttttaggtccatcagtaccaacctggcctccagcatcaagagacgt
aggtcctccaaagacacgcagtacccacctactgacatcacgggccagctcaacttgtct
gacccgtctgtcagcaccgtggtttaa
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