Trematomus bernacchii (emerald rockcod): 117485208
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Entry
117485208 CDS
T09643
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04020
Calcium signaling pathway
tben04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117485208 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117485208 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117485208 (grin1b)
Ion channels [BR:
tben04040
]
Ligand-gated channels
Glutamate (ionotropic)
117485208 (grin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
SIP
Motif
Other DBs
NCBI-GeneID:
117485208
NCBI-ProteinID:
XP_033989637
EnsemblRapid:
ENSTBNG00005016792
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MELHGLLLALLQLLSVARGGCEPRQVNLGAVLSQKRYEQVFKEAVSAANLLYGKDKFRMN
AISVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGL
TTRMSIYSDKSIHLSFLRTVPPFSHQAQVWFDLMREFRWNHIILIVSDDHEGRAAQKRLE
TLLEERETKNKKRNYENDHQNYDFRRTPKAEKVLSFSPETNLTALLLEARDLEARVIILS
ASEDEAAAVYKAARQLNMTGSGYVWLVGEREMTGKALSEAPDGLLGLQLINGKNESAHIA
DAVAVVAQSLQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYPDGLTGRIEFND
DGDRRFATYSIMNYQQKQGRVVQVGVFNGSQVVMNPQRKIIWPGGETEKPVGYQMSTKLK
IVTIHQEPFVYVKPTKTDGTCKEEFTLNGVLIKKVICTGPNGTLPGQPIVPQCCYGFCVD
LLIKLAMSMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINN
ERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYESAAEAIVAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIG
MRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPYPTDITGQLNLSDPSVS
TVV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacggcctcctgctggcgctgctgcagctgctctcggtggccagggggggc
tgcgagcctcgacaggtgaacctgggagccgttctgagtcagaagagatacgagcaggtg
ttcaaagaggctgtgagcgccgccaacctgctgtacgggaaggacaagttcaggatgaac
gccatctccgtcactcacaagcccaacgccatccagatggccctgtccgtgtgcgaagac
ctcatctccaaccaggtgtatgctatcctggtctctcacccccctcagtctaacgaccac
ctgactcccactccggtctcctacactgccgggttctaccggatcccggtggtcggcctc
accacccggatgtccatctactccgacaagagcatccacctgtccttcctccgcaccgtg
cctcccttctcccaccaggctcaggtgtggttcgacctgatgagggagttcaggtggaat
cacatcatcctcatcgtgagcgacgaccacgagggccgcgccgctcagaagagactggag
acactgctggaggagcgcgagaccaagaataaaaaaaggaactatgaaaacgaccatcag
aactatgacttccggagaacgcccaaggcggagaaggtgctgtccttcagcccggagacg
aacctgacggctctgctgctggaggccagagacctggaggctcgagtcatcatcctctct
gccagtgaggacgaggcagccgccgtgtacaaagcggcgcggcagctgaacatgacggga
tcaggatacgtttggctggtcggagagagagagatgaccgggaaggctctgagcgaggct
cctgacggcctgctgggcctccagctgataaacggtaagaacgagtcggctcacatcgcg
gatgcggtggcggtcgtggctcagtcgctgcaggagctgtttgagaaggagaacatcacg
gagcctccaaggggctgcgtgggaaacaccaacatctggaggaccgggccgctcttcaaa
cgagtgctgatgtcatcaaagtatcccgacggtctgacgggacgcatcgagtttaacgac
gacggcgaccggcgcttcgcgacctacagcatcatgaactaccagcagaaacaagggcgc
gtcgtccaggtcggggtcttcaacgggtcacaggtggtgatgaaccctcagaggaaaatc
atctggcccggaggagagacggagaaaccagttggatatcagatgtcgactaaactgaag
atcgtgaccatccaccaggagccctttgtttacgtgaaacctacgaagactgacgggacg
tgtaaagaggagttcacgctcaacggagtcctgatcaagaaggtgatctgcaccgggccc
aacgggacactcccaggtcagcccatcgtccctcagtgttgctatggtttctgtgtcgac
ctgctcatcaagctggcgatgagcatgaacttcacctacgaggttcacctcgtggctgat
gggaagttcggcacgcaggagcgcgtgaacaacagcaataagaaggagtggaacggcatg
atgggggagctgctgggggggctggccgatatgatcgtggcccccctgaccatcaacaac
gagagagcccaatacatcgagttctccaaacccttcaagtaccagggtctcaccatcctc
gttaagaaggagatcccacggagcactctggactccttcatgcagccgttccagagcaca
ctgtggctgttagtcggtctgtcggtccacgtggtggcagtgatgctttacctattagac
cggttcagcccgtttggaaggtttaaagtgaacagtgaagaagaagaagaagacgccctc
accctgtcctccgccatgtggttctcatggggagtgctgttgaactctgggataggagaa
ggagctcccaggagtttctcagcgaggattctgggtatggtgtgggcaggattcgctatg
atcatcgtagcatcatatactgccaacctggcagccttccttgtgttggaccggcctgag
gagcgcatcactggcatcaacgaccccaggctgcgtaacccgtcggataagttcatctac
gccacagtgaagcagagctcggtggatatctacttcagacggcaggtggagctgagcacc
atgtaccgccacatggagaagcacaactatgagagcgccgcagaggccatcgtggccgtc
agagacaacaagcttcatgccttcatctgggacagcgctgtgttagagttcgaggcgtcg
cagaagtgcgatctggtgacgacaggagagctcttcttccgctccggattcgggatcgga
atgaggaaagacagtccctggaaacagaacgtttctctggctattctcagctctcatgag
aacggcttcatggaggatctggacaagacgtgggtccgataccaggagtgtgactccagg
agcaacgcccccgctaccctcacattcgagaacatggcaggtgtgttcatgctggttgcc
gggggcatcgtcgccgggatcttcctcatcttcatcgagatcgcgtacaaacgacacaaa
gacgctcgcaggaaacagatgcagctcgccttcgctgccgtcaacgtctggaggaagaac
ttacagccgtacccgactgacatcaccggccagctcaacctatcggatccctccgtcagc
accgtggtctga
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integrated database retrieval system
