Trematomus bernacchii (emerald rockcod): 117488072
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Entry
117488072 CDS
T09643
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03020
RNA polymerase
tben03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117488072 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
117488072 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117488072 (polr2a)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117488072 (polr2a)
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117488072 (polr2a)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117488072 (polr2a)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117488072 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117488072
NCBI-ProteinID:
XP_033992696
EnsemblRapid:
ENSTBNG00005015035
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKMGGLMDPRQ
GVIDRSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKILRCVCFFCSKLLVDPT
NPKIKDILIKSKGQHRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQDAEEDITKDKGHG
GCGRYQPRIKRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGLDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLHIDQVGVPRSIAANMTFPELVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPALLKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNHWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFRFDCTNERALRRILQEDVVKDVLTNANVQSSLEKEYDRMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLQDLSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINSGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIDQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLSLLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAENDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYTPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcatggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggttgtccgttacggaggggggtatcaaa
taccccgaaacaacagaaggaggacgtcctaaaatgggtggccttatggaccccagacaa
ggggtcatagaccgatctgggagatgtcagacatgtgcaggcaacatgacagaatgccct
ggccacttcgggcacatagaactggcaaagcccgtcttccacgtcggcttcgtaacaaag
attatgaagattcttcgttgtgtctgcttcttttgctctaagcttctagtggatccaacc
aatccaaagatcaaagacatcctaataaaatctaaaggacagcacaggaaacgtttgaca
catgtatacgagctgtgcaagggaaaaaacatctgtgaaggaggagaggagatggacaac
aagtttggaatggaacagcaggatgctgaggaggacattaccaaggacaagggtcacggt
ggctgtgggcgttaccaaccccgcatcaaacgcaccggcttggagctgtacgccgagtgg
aagcacgttaacgaggattcgcaggagaagaaaatcctgctgagtcctgagcgtgtgcac
gagatcttcaagcgcatctccgatgaagaagacgtcatcttgggcctggaccccaagttt
gcccgaccagagtggatgattgtaacggtgttacctgtgcctcccctggctgtcaggcct
gctgtcgtcatgcagggctctgctcgaaaccaggatgacttgacccacaagctggcggat
attgtcaaaatcaacaaccagctgagaagaaacgagcagagcggtgctgcggctcacgtc
atcgctgaggatgtcaaactgctccagtttcacgtagccaccatgattgacaacgagctg
ccaggcctgccaagggcaatgcaaaagtctggccgtcctctaaaatcccttaaacagcgt
ctaaaggggaaggagggccgagtccgaggtaacctcatgggtaagcgtgtggacttctcc
gcccgtaccgtcatcacgccagaccccaacctgcatatcgaccaagtaggcgtgcctcga
tccatcgcagccaacatgaccttcccagaactcgtcacaccctttaatatcgacagatta
caagagctggtacgaagaggcaacagccagtacccaggagccaaatacatcatccgggac
aacggagaccgaattgaccttcgatttcaccccaaaccaagtgaccttcacctgcagatc
ggctacaaggttgaaagacacatgtgtgacggcgacatcatcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtccgaatcctgccgtggtcaacgttt
cgactcaacctcagtgtaaccaccccatacaacgctgactttgacggggatgagatgaac
ctccacctgcctcagtccctggagacgagggctgaaatccaggagctggccatggtgccg
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acagccgtgcgcaaattcaccaagagagacgttttcttagagaggggggaggtgatgaac
ctcctcatgttcctctccacctgggatggaaaagtgcctcagccggccctcctgaagccc
cgccctctgtggaccgggaagcagatcttcagcctaatcattcccggacacattaacgtg
atccgcacacacagcacccatcccgacgaggaggacagcggcccctacaagcacatctca
cccggggacaccaaggtcatagtggagaatggggagctgatcatgggcatcctgtgtaag
aagtccctgggaacctccgccggctccctcgtccacatctcgtacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaaccactggctgctcatc
gagggtgcttccattggtattggtgactccattgctgatgccaagacctacctcgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccccggtaacactctgaggcagacctttgagaaccaggtgaat
cgtatcctgaacgacgctcgtgacaaaactggatcctccgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccgggtccaaaggctcaaagattaacatctca
caggttatcgccgtggtggggcagcagaacgtggagggtaagcgaatccccttcggcttc
aaacaccgcacgctgcctcacttcatcaaggatgattacggtcctgagagcagaggcttc
gtggagaactcctacctggccggtctgacgcccactgagttcttcttccacgccatggga
ggcagagagggtcttatcgacacagccgtcaagacagctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcaccgtgcgtaactcc
atcaaccaggtggtgcagctgcgctacggagaggacggcctggcaggagagaacgtggag
tttcagaatgtggcaacgctcaaaccctcacacaaggccttcgaaaagaagtttaggttt
gattgcaccaatgagcgagcgctgaggcggatactgcaggaggatgtagtgaaagacgtg
ttgaccaatgctaatgtgcagagctctttggagaaggagtatgacaggatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagtaaggttgtgctgccatgcaac
ctggccagaatgatctggaatgctcagaagatcttccgcatcaacattcggaccccgaca
gacctcaaccctctgagggtggtcgagggtcttcaagacttgagtaaaaagctggtgatc
gtgaacggtgaggacccgctcagtcgacaggcccagcagaacgccaccctgctcttcaac
atccacctgcgctccaccctctgctccaaacgcatgacggaggagttccgcctttccact
gaagcctacgactggctgctgggagagatcgaggccaaattcaaccagtccattgctcac
ccaggagaaatggtgggcgctctggctgctcagtctctgggagagcccgccacccagatg
accctgaacactttccattacgccggtgtgtccgccaagaacgtaacactgggtgtgcct
cgtctaaaggagttgatcaacatctccaagaagcccaaaaccccctcgctgaccgtgttc
ctgctgggtcaggcggcccgtgacgccgagagggccaaagacatcctctgtaggctggag
cacaccacactgcggaaggtgacggccaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactatgagatgcccgacttt
gacgtgacgcgcatctcaccgtggctgctgcgtatcgagctcgaccgcaagcacatgacc
gatcgcaagctgaccatggagcagatcgcagagaagatcaactcaggtttcggagatgac
ttgaactgcatcttcaatgacgacaatgcagagaagctcgttttgcgaatccgaatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggacaaaatggacgatgac
gtgttcttgaggtgcatcgagtccaacatgctgactgacatgaccctgcaaggcattgac
cagatcagcaaggtgtacatgcatttgccccagactgacaacaagaagaagatcatcatc
acggaggaaggtgagttcaaggccctgcaagagtggatcctggagacggacggtgtgagc
ctcatgagggtcctcagcgagaaggacgtggatcccgtcaggaccacctccaacgacatc
gtggagatcttcacggtcttgggaattgaggcggtgcggaaggctctggagagggagttg
aaccacgtcatctcctttgatggttcctacgtcaactaccgccatttgtctctgctttgt
gacaccatgacctcccgcggtcatctgatggccatcacgcgtcacggcatcaaccgtcaa
gacacaggaccgctcatgaagtgttcctttgaggaaacggtggatgtgttgatggaggcg
tcctcccacgctgagaacgaccccatgaagggtgtgtcggagaacatcatgctcggccag
ctggccccatgtggtacaggatgcttcgatttgctgttggatgcggagaagtgtaaatac
ggcatggagatccctacaaacattcctggcatcagcgtggctggacccactggaatgttc
ttcggcacggtgccgagtcccatgagcggtatgtcgcctgccatgaccccctggaacaca
ggagcgacccccgcctacggagcctggtcccccagcatcggaagcggcatgacccccgga
gcggcaggtttctctcccagcgcggcgtcagacgccagtggcttctctcccggctactcc
cccgcctggtctcccactcctggctctccggggtctccaggacctgccagcccctacatc
ccatctccaggtggcgccatgtcacccaactactccccaacctcccccgcgtatgagcct
cgctcccccggaggctacaccccccagagccccggctactcccccacctccccctcctac
tcccccacgtctccctcttactccccgaccagccccaactacagccccacgtctccctcc
tactcccccacctcccccagttactccccgacctctccgtcctactctcccacatctccc
tcctattcccccacgtctccctcctactcccccacctccccgtcttactccccaacatcc
ccctcctactcccccacctcacccagctacagcccgacgtcgccgagctacagcccgacg
tcgcccagctactcccccacttcaccttcctactcccccacctccccctcttattctcca
acctctccatcttactctcccacctccccgtcttactcccccacctcgccttcctactcg
ccgaccagcccgagctacagcccgacatcacccaactacacccccacctctcccagttac
tcccccacctctccctcttactctccaacatcgccctcctactccccgacctcccccaac
tacaccccgaccagccccaactactcccccacctccccctcatactcccccacctctccg
tcctactcgccctccagtcctcgcttcacccctcagtctcccacctacacccccagctcc
ccctcatacagccccagctccccctcctactccccaacctccccaaaatatacccccacc
tccccctcgtacagccccagctccccggagtacacccccacctctccgaagtactccccc
acctcgccgaagtactccccaacatcgccgaagtacactcctacttcgcccacctactcc
ccgacgactccaaaatacagccccacctctcctacctactcccctacctcccccacgtac
acccctaccagccccaaatactccccgacctctcctacttactcccccacttcacccaag
tactcacccacgtctcctacgtactcgccgactagtcccaaaggctccacgtactccccc
acctctccgggctacagccccacgtcgcccacctacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
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integrated database retrieval system
