Trypanosoma brucei gambiense: TbgDal_VI3460
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Entry
TbgDal_VI3460 CDS
T06526
Name
(RefSeq) pre-mRNA cleavage complex II Clp1-like,conserved, putative
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TbgDal_VI3460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_VI3460
Enzymes [BR:
tbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
TbgDal_VI3460
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TbgDal_VI3460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
AAA_22
AAA_16
DUF815
AAA_18
Motif
Other DBs
NCBI-GeneID:
23862001
NCBI-ProteinID:
XP_011774153
UniProt:
C9ZR38
LinkDB
All DBs
Position
6:complement(869764..871035)
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AA seq
423 aa
AA seq
DB search
MSSNCRTEEFNLERKELKIRFRSSGYVVLTDGAATIFGAPLKKNTRYDFSMCSIPVVSPV
ACRLHVGGDFTSVVTYIRTDVYDIHAVLDFARHEASKRGVPSLNDTNPGGTSSNSLKEGP
WGPRVLVVGDVNTGKSSLCRSLANMAVASQVHGVALVDVDVGQQGITCPGSVATAFVDNY
LPIDEGFNTVMPLTAFFGDKTVNASTRGRYLDLCASLARGIISFSLATPKFAAGGVIVNT
MGWVTDMGLDLLFQLLSVFSITHVVVCGSGNKLTETLRNAVIDEKIIFLKYPKQTGVFKR
KGNVRDSWRAEQIVSYFQGTKRTPLLSYRAVCYVKDVHFIHALKLEPLSWKDVEPLSLAA
VSWTDSLEAVNDINVAGFIVLLEVGETFFSFLSPVAGTLPKPFILVSPTIRLPRDKVPPL
QAP
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctaattgtcgcactgaagaattcaatttggagcgcaaagaactaaaaatccgc
tttcgtagttcggggtatgttgtacttacggatggagcagcgaccatttttggtgcacct
ctaaaaaaaaatacccgctacgacttttccatgtgtagcataccagtggtatctcctgtg
gcgtgtcgacttcacgtgggaggggatttcaccagcgtggtaacatatattcgtactgat
gtgtatgacatccatgctgtgcttgatttcgcgcgccatgaagccagcaaacgcggtgta
ccgtctttaaacgacaccaatcctggaggcacgtcatcaaactctttgaaggaggggcca
tggggcccacgtgtcctcgtagttggtgacgtgaataccgggaagagtagtttgtgccgc
tcacttgcgaatatggcagtcgcatcgcaggttcatggggttgcccttgtggacgtggat
gttgggcaacaaggtattacctgcccaggaagtgttgcaacagcgtttgttgataactat
ttaccgattgatgaggggtttaatacggtgatgccattaacggccttctttggtgataaa
accgtaaatgcttccactcgaggacgatatttggatctatgtgcatcgttggcacgggga
attatatcttttagtttggccaccccaaaatttgctgccggtggcgttattgtgaatact
atggggtgggtaactgacatggggcttgacctcctttttcagctactttccgtgttcagt
atcacgcatgtagtagtctgtggttcaggtaacaaacttacagaaaccttgcgtaatgca
gtgatcgacgagaaaatcatttttctcaaatacccaaagcaaacgggagtgttcaagcgc
aagggtaacgttcgcgacagctggcgtgcagagcaaattgtaagttactttcaagggacg
aaacgtacccctttattgtcttacagagctgtttgttacgtaaaggacgttcacttcatc
cacgctttaaagttggaacctctttcctggaaggacgttgaacctcttagtttagctgct
gtttcttggacagattccctagaagcagtcaacgatataaatgttgccgggtttattgtt
cttctggaggtaggggaaacattcttttcgtttctctccccggtagcgggtacgcttccc
aaacctttcattttggtttcgccgactatcaggcttccacgggataaagtgccaccttta
caagccccatga
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