Trypanosoma brucei gambiense: TbgDal_VIII4910
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Entry
TbgDal_VIII4910 CDS
T06526
Name
(RefSeq) DNA-directed rna polymerase I largest subunit,putative
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TbgDal_VIII4910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbg03021
]
TbgDal_VIII4910
Enzymes [BR:
tbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TbgDal_VIII4910
Transcription machinery [BR:
tbg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
TbgDal_VIII4910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
23863699
NCBI-ProteinID:
XP_011775827
UniProt:
C9ZVW2
LinkDB
All DBs
Position
8:1291718..1297063
Genome browser
AA seq
1781 aa
AA seq
DB search
MSLITDFPFHAYLGDLKTRRVMGAKDAVSLSLLASEDMSGIAFVEVRTRAGQEDRSAPWR
PVVRNGENHATFYDTRMGNFDANPFPPQTCQTCAASLTGKYGNERCHGHFGFVGMPRIRP
GSAHSDSDRLVVLNPHLAMDADRLFRAKCFFCHKFRAPTFDVERFRQALVLADHGLPGDA
LHLLDTVPTAKGHDAMLNHRRMANEEIVNDVSILQSYVDRILRQRASGCSEEDAKARVTM
AQKGTVDVRNDICNMAISHLRSFSGPCSHCTAISPTFLKRGGIIFFLFRKSNLVTNIAKG
FLTQQEVSEWEAVNRLHGRTGTYFDGRQMLFHMKNLFAKEQAILGLLYPNLGEPSVFTKT
NKVVPASERYKLFFLDRVLVPPLPLRLSSGVRVNDNGLIIPDEQTRALSDILGFVEQIEC
FHTLSANSTNGRSFITDAQRAVNESNLRNLQQKVDEFYAEIVNSFAKKEGLFRMNMMGKR
VNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPRKYPG
ATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTLIVYRHILNGDRVIFNRQP
TLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHVPQSIETRAEVETLMDA
NINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPYIQENVGITLA
ELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGTSQIQPSAFDR
IPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQ
LFAAFGRVLLLALRKEGLSLAMDDMFLVDEERRCDLLRKLDDIALDVPDEEATAAPMIAD
YATKIQQEFVPHRMLVPFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNS
SKTLPSFFTNEKRARSFGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRC
LIKGLESLVVHWDRTVRDSNGSVIQFMYGGDGLDPCKASTLTAWEMMKDNVVDVSKRFGG
DASESVAGAEDGAAAGLKGMRNEDGKPTTEAVQNAHMEQQLSTYPLPASLDKSLSEYLCK
KADFPLFRKVSTLARWDAKQQLKERLQRRRQKWVGAFEKTLADITARRRLWALCEPGEPV
GLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVVPVTNATE
EDEKVIAKMLRAGVAAKLTDCLAKVTDGAGGQSASSSMQRNLNTGFGKGYHYHVARGRTG
MVITVSFLFSRSCLEELRKRMCMSPSEHRQSFTEALKNVVRLIMRSLSAVPREKESGDGS
GNTGGMKGGSGRADRKRKRSGPDDGGGPLGGTFGDEIMRIEEGTDSDDGMSERSSIGGGR
AGSEISSLHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDDASDSEAADPDLYARRSGSPA
RDAEDGDEMQDRDGTDWGGTSMQGVVGYDNFPEIHMSFTKSNFGAVIAPLSTAAAARDGV
VQLHEDFFIVNAVLRTPSDVIAVIPDVVDNALEAQRMPSWLPQFGSLTFTRLKDKGSGQL
VFQGPGSTMRNVMSFLSLFTVGIKSIKLHQACSTDIRDMGTYFGIESGYAALYDELNKLF
NRYNVDPRHLSLIADTSTHRGRWENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMS
DDLESFSSAIMVGERPRVGTASVRLSTDTAILRDVLERNFA
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcattacagactttccattccatgcttacttgggtgacctgaagacccgccgt
gtgatgggcgccaaggacgccgtgtccctgtctctgcttgcatctgaggatatgtcgggg
atcgctttcgtggaggttcgcacgcgtgccggccaggaggatcgttcggcaccttggcgt
ccagttgtaagaaatggtgagaatcacgccacattctacgacactcgaatgggtaacttc
gacgctaacccgtttccaccacagacatgtcaaacgtgcgcagcgagcttgacaggaaag
tacggcaatgaacgttgtcacggtcactttggatttgttggaatgccgcgtatccgccca
ggcagtgcgcattcggactccgatcgccttgtcgttttgaatccgcacctcgcgatggat
gcagatcgtttgttccgagcgaaatgcttcttttgtcacaagtttcgagcaccaacattt
gatgtcgaacgattccgccaggcactggttctggccgaccatggtttaccaggagatgcg
ctgcatcttctcgacacagtgccaacagcgaagggtcacgacgctatgctgaaccacagg
cgcatggcaaatgaggaaatcgtcaacgatgtatccatccttcagtcgtatgttgatcgt
atcttaaggcagcgcgccagtggatgcagtgaggaggatgcgaaagcaagagtgactatg
gcacagaagggaactgtggacgttcgcaatgacatttgcaacatggcgattagtcatcta
agatcattcagtggtccttgtagccactgcactgctatttctccgaccttcttgaagcgc
ggcggtattattttctttttattcaggaaatcgaatcttgtgacaaacattgccaaagga
ttccttacccagcaagaggtatctgagtgggaggctgtcaaccggctgcatgggaggact
ggaacatattttgatggtcgtcaaatgctttttcatatgaaaaacctattcgcaaaagag
caagctatccttggtttgctgtacccaaatcttggtgaaccgtcggttttcaccaaaacc
aacaaggttgtcccagcaagtgaaaggtacaaactgttctttttggaccgtgttctcgta
cccccattacccctgaggctttcgtcaggcgtgagagtaaatgataatgggttgataata
cccgacgagcaaacacgtgctctttccgatatattggggtttgttgagcagattgagtgc
ttccacacattgagtgctaattctacaaacgggcgtagtttcatcactgatgcgcagagg
gctgtgaatgagtcgaacctccgcaaccttcaacaaaaagtggatgagttttatgcagaa
atcgtaaatagctttgcgaagaaggagggtctcttccgcatgaatatgatgggaaagcgt
gtcaatcaggcctgccgttcggttatttcgcctgatccattcgttgaaccgaacgaagtg
cttttaccaagaccactagcccgtgctttgtcgtttcctgagcaagttacttgtttcgca
ccagctcgcatgaatctgttgaaacactgcgttgtgaacgggccacgtaaataccccggc
gccacacacattgagcttcgtcatgccaacggtgagatccgttctgttgaccttaatgta
cccgagcagacgcggcggcagcatgctgcaaggttttttgcgatggcccagagtggtgtg
acgctaatcgtttatcggcacattcttaatggtgatcgcgttatatttaatcgccaaccc
acactccataaaccgagtatgatggggtatcgcgtgaaggtactttcagggtccaaaact
attcgctttcactacgtgaatggtaactcctttaacgcagacttcgatggtgatgaaatg
aacgttcacgttccgcaaagcattgagacgcgggccgaggttgaaacgctgatggacgca
aacatcaactaccttgtgccgacgtctggcagaccgatccgtggtcttatacaggatcat
gtggcggcaggtgttttggtaacgttgcgcgacaagttctttgatcactccacctttgtg
caactggtgtacaatggcgtcggtccatacattcaggaaaacgttggcataactcttgct
gaacttattcccattccagcaattcttatgcctcggccaatgtggactggaaaacagctg
atatctgtgatggttcggttttctagtggattgtctgccgcaagcgactgtggacgggag
atagagggcggaatcacactcaaaggcacttcacaaatccaacccagcgcatttgacaga
ataccggcgggtagctgcgacgcagtgcgtgcgaaatccggggcagtggttgattctact
gtcatgtttgcgaacagtgagctaattaccggattcatgtgtaagaagcagcttggagcc
tctaatatgtctgctccccaccatgtctatgagctttacggaccacataggacgggacag
ttgttcgctgcttttggccgtgttcttctgctggctctacgaaaggagggtctttccctt
gcgatggacgatatgttcctcgttgatgaagagcgccgatgcgacttgcttaggaagctt
gatgatatagcgttggatgttccagatgaagaggccactgctgcaccgatgattgcagat
tatgcaacaaagattcagcaggagtttgttccgcaccgcatgctggtgcccttcccaaag
aatcatcttcttctgatgactatttcaggtgcgaaaggaagcaacctgaacgccacacaa
atgtcactgcagttgggccagcagctgttcgatggactgcgcgtgaagcgtatgaactct
tccaagacgcttccgtccttcttcactaatgaaaagcgtgcccggtcctttgggtttgct
atgggttccttcgcctcagggatcagaccagccgagtataccattcatgcaatggctggt
cgcgacggccttattgataccgctgtgaaaacctcccgttctggtcacttgcaacgctgc
ctcatcaaaggtctcgaaagccttgtggtccattgggaccgtacggtgcgtgactccaac
ggcagcgttatccaatttatgtatgggggtgacggacttgacccgtgcaaggcttctacg
cttacggcgtgggagatgatgaaggataacgtagttgatgtttccaagcgattcggagga
gatgcctcagaaagtgttgccggtgccgaggatggcgcggcggcagggttgaaggggatg
cgaaacgaagatggaaagcccacgactgaggccgtgcaaaatgcgcatatggagcagcaa
ctatccacgtatcctcttccggcctcactcgacaagagtttgtctgagtatctgtgcaaa
aaagcggatttcccgctcttccgcaaggtgtcgacgctagcccgttgggatgcgaaacag
cagctaaaagagaggttacagcgaaggcgccagaagtgggttggtgccttcgaaaaaacg
cttgcagacattactgcccgcaggcgtctgtgggcattgtgcgaacccggtgagcccgtt
ggcctccttgcagcgcaagcagctggtgagccgtcaacacagatgaccctcaacacattc
cacactgctggttcaactgtgtcccacgtgacggagggtattcctcgactccgcgagtta
ctgatctacgcctccgttaataaggcggctgttgttgtacccgttactaatgctacagag
gaagacgagaaagtaatcgccaaaatgcttcgtgcaggtgtcgccgcaaaactgaccgac
tgtctcgcgaaggtcacagatggcgctggtggccaaagcgcttccagctcgatgcagcgg
aacttaaacactggctttggtaagggctaccactatcacgttgcgcgaggccgcactggt
atggtgattacggtgtctttcctgttttcgcgctcgtgtttggaggagttgcgtaagcgc
atgtgtatgtcaccatctgaacatcgacaatcttttactgaagcactaaagaatgttgtg
cggctcatcatgaggtcactgagcgccgttccacgcgagaaggaaagcggtgacggttca
gggaacactggagggatgaaagggggaagtgggcgcgccgacaggaagagaaagcgatca
ggcccggacgatggcggtggtcctcttgggggtactttcggagacgaaattatgcgcatt
gaagagggaaccgattctgatgatggcatgagcgagaggagcagtataggtgggggtcgg
gctggctcggagatctcatctctacactcggatggaaccgataccaggggcatagcagga
agcgatacgggcgggccgcagcgacggaggggctctgttgaaagtggccgcggtgacgat
gcttctgacagtgaggcagctgaccccgacttatatgccagacggagtggctctccggcg
agggatgcggaggatggagatgagatgcaggatcgggacggcacggattggggaggaacg
tcgatgcaaggtgtggtgggatatgacaacttcccagagattcacatgagtttcaccaag
tcaaatttcggtgctgttattgctccccttagtactgctgcagcggcccgagatggggtt
gtgcaactacacgaagactttttcatagttaatgctgtgctgcgcacgccctcggacgtc
attgccgtcattccggacgttgtggataatgctttggaggcgcagagaatgccctcgtgg
ttacctcaattcgggtccctcactttcactcgactgaaagataaaggatctggccagctt
gttttccaaggacctggctcgacaatgcggaatgtgatgtctttcctttcccttttcacc
gttggcataaaatcgataaaacttcaccaagcttgctccactgatattcgggatatggga
acatacttcggcattgagtctggatacgctgcgctttacgatgagctcaataaactattc
aaccgctacaatgtcgacccgcggcacttgtcgctcatcgccgatacgtctacccaccga
gggcgatgggagaacttcaatttcactggtgtcatatcaacgagcgcgagcccactgttt
cagatgacatttgcctcgtcgaagcgctggttgcacagagcggtgagtcggggaatgagt
gacgacctcgagtcctttagttctgccatcatggtgggggaacgccctcgtgtgggaacg
gcgtccgtgcggctctcgactgatacggcgattttgcgggatgtgctcgagaggaacttt
gcataa
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