Trypanosoma brucei gambiense: TbgDal_XI610
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Entry
TbgDal_XI610 CDS
T06526
Name
(RefSeq) RNA polymerase I second largest subunit,putative
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TbgDal_XI610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbg03021
]
TbgDal_XI610
Enzymes [BR:
tbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TbgDal_XI610
Transcription machinery [BR:
tbg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
TbgDal_XI610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpa2_4
Motif
Other DBs
NCBI-GeneID:
23867619
NCBI-ProteinID:
XP_011779210
UniProt:
D0A5J5
LinkDB
All DBs
Position
11:complement(126246..130883)
Genome browser
AA seq
1545 aa
AA seq
DB search
MTAMERLKLVRCSIARLRYLGERHRHTSKLDTTGGDRLLSFFEGLRKRVLKLEYNPRVVA
KSKVGAPKHLDYIRGHANALLGEASTIISECEQAMDRSEAVYEGLAYHQLQDTHRELENL
VGLLSGAPSDMESAGSLKLLADLVSPHVAEFDAFAEQRVPEFLQELKNEGFLFSSVINDS
QQPANAIGLLSVFIVDVAIGVRPGRSARLVIQHALHNLARLKSRVDKADLTLGAEEDSSN
NEHHRMQSLEFEVIRGRLREAKEELERIRDKWDHDEGDIFSRAGTGVQSLQSIIDAKRVK
ESTVIEEAQAIHDRTVYACLPFASPQYCRIRSETYSQPCHVRVGFKFVAKGDGSVSRTKT
QLIYNLMPEFLILMRQQGIAPSDHERFATLAPSKYELWLSLGELPEMVLGARCALRGVNQ
RLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNVPLNIERERFATVDSFFSPRAVII
RCKRPSGLTVQNYFYYATKGEVIFTFARRVVWNIPALLVLSALNTRHRTSLDIYKLLTIG
LTNGRSPHAARVEALLQHHSQMPYSTLDNFLDYLAVVGLMYRRYHESSFIFRFLPQYHTS
FATQHDAWYGLFMLRRHMLPHLNTAEATPDLPPTATSREIREWLSTGLQEELAAKFDALI
GILRQLLVFNDGATGNQGNDVLAYQEVFTVSQVLIGAFEVSLMKTMGAVTFRMAGQLSPE
IFQATMCLAETPVREAANTLEKLNQLLEYSCRNNGPDPLITLNRLLLTGNFALDREEDFY
SPQTAGWAVMTEHLNFYRSFEQLMCVHRGKSIAEMRSSDVRRYPCEAYGFICMVHSPDGE
DCGVLNHLSISTVLSASPRVGSSQYKILLAFIEEELKNVRNTTSLISCVDQLVGTVPVWL
EGRLLGYLSPNEALSASKALTQKKALRSRGVVGVTGIVRRDSISSLNTMEVVYIPPGSKD
PMGLYIFYQYGRLMRPVLQIESPSRGGDLPFPVVYLGTWEQSWRDIAAVPSDLFDGFDQL
RRKYEFMEQNGFNILSFTSSTIPFFEHNCSPRNLFQCGLSKQTAGTQLQTQAWRRDAKLF
RMYYPQRYISRTLPMDYFGLDDVSLGVNAVVAILAYTGYDLDDAMILNSTAKQFGMLNAG
VTVAKIVKASGKGDSNDVFVFHNCLPDGQPFTPELDRHGLPKKRAVPNATAYFSFDTDHK
YPSLRDSSAVYCCAKRFEYIDPLTNEKTYEYTRHQITKWRHFDKGEDAWVHSVIPLTYDG
PDPTSVLVLFRIPRPPVIGDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIINPHAF
PSRMTVGMVLEMMGAKLGCIQGRLCDHSAWSVIDEQPRSAKTIGDALEALGYNRYGREKL
IDGITGEEIEAEVLVGISGYQRLRHMVSDKWQARARTDSHTHRAVTKTGQPVKGRKRHGG
VRVGEMERDALLSHGVAEVVIDRLLHVSDKTKAFICVECGSMLSIYERHATEYSTWKTCK
FCSAGLHETDDTIAFVEIPQVLRLWATELTSVGIRVVLKTSETSL
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaatggagaggctcaaacttgtgcgctgctccatagcgcggctgcgctatctt
ggtgagcgccatcgtcacacgtcgaagctcgacacaaccggtggtgaccggctgctgagt
ttcttcgagggactacgcaagcgagtactgaagcttgagtacaacccccgtgtagtcgca
aaatccaaagtcggtgcaccaaagcaccttgattatatcagagggcacgcgaatgctctt
ctgggagaggcatcgaccattatttccgaatgtgaacaagcgatggaccgaagcgaagct
gtgtacgagggtcttgcgtatcaccagctccaagatacacatcgcgagttggagaactta
gtagggttgctatccggtgcgccatcagatatggagagcgctggatctttgaaactactt
gctgacctggtttctcctcatgtggccgaatttgatgcctttgcagagcagcgcgtgcca
gagtttttacaagaattgaaaaacgagggtttccttttctcttcagtaataaatgattct
caacaacctgccaatgcgattggacttctgtcagtgttcattgtcgatgtcgccatcgga
gttcgacctgggcgttctgctaggttggtgattcagcatgcccttcacaacttggccagg
ctcaagtctcgtgttgacaaagccgatctaacccttggggcggaggaagacagtagcaat
aacgaacatcacaggatgcagtctctcgaattcgaggttattcgtggccgtttaagagaa
gctaaggaggaattggaaagaataagggataagtgggatcacgacgaaggggatatattc
tcacgagccggtactggggttcaaagtttgcagtcaattattgatgcaaagcgagtgaag
gagtcgacggtgattgaggaggcgcaagcaatacatgatcgaacagtttatgcgtgcctt
ccttttgcgtctccgcaatactgtcgcattcggagtgagacatattcccaaccttgccat
gtgcgggtgggttttaagttcgttgccaagggagatggatcagtctctcgaacgaagacg
cagttgatatataatcttatgccagaattcttgattctcatgcgccaacaagggattgcc
ccttctgatcatgagcgttttgccacccttgcacccagtaagtacgagttgtggttatcc
ctgggagagttaccggagatggtattgggtgctcgctgcgccctccgcggtgtgaaccag
cgacttgatcactttcgtgccttagaggagcaaaaggaggtaggcggttatttcgttttg
cgcggtggtgagcgtattctacggaacctcattctacagcgctgcaatgttcctcttaat
atcgagcgtgagcggtttgcgaccgtggattctttcttttctccgagggcggtaattatc
cgttgcaagcgtccgagtggtttaaccgtccaaaactacttctactatgcaaccaagggt
gaggtgatctttaccttcgcacggagggtcgtgtggaatatcccggccctattggtatta
tctgccctgaacacccggcatcggacttcgctggatatatacaagcttcttaccattggc
ctcaccaacggtagaagccctcatgctgcgcgtgtggaggcacttttgcagcaccatagc
cagatgccgtacagtactctcgacaatttcctggattatttagcggtcgtgggtctgatg
tacagacggtaccacgagtcatcctttatctttcggtttctcccgcagtatcacacttct
tttgccactcagcacgacgcctggtatggtttgttcatgctgcgacgacatatgttgccg
cacttgaatactgctgaggctacgccggatttgccccctacagccacctcacgagagatc
agggagtggctttccactggactccaggaggagctagctgcgaagttcgatgcattaatt
ggtatcttgcgtcagctgttggtttttaatgacggtgcaacgggtaaccaggggaacgac
gtgctcgcttatcaggaggtgttcacggtttcgcaagtgctaataggtgctttcgaggtg
tcattgatgaaaaccatgggggcagtgacctttcgtatggcaggtcaactttcccctgag
atatttcaagccactatgtgcttggcagaaactccagtacgagaagccgccaataccctt
gagaagctgaatcagttactggaatacagctgtcgtaacaatggacctgatccacttatt
acactcaatcggttgcttcttacgggaaactttgcccttgaccgtgaagaagatttttat
tctccccaaaccgctggctgggcagttatgacggaacacttaaacttctatcggtccttt
gagcagctcatgtgcgtacatcgtggtaaatcgatcgcagaaatgcgttcgagtgatgtg
cgcaggtacccatgcgaggcttacgggtttatatgcatggttcatagccccgatggcgag
gattgcggtgtcctaaatcacctgagtataagcacggttctttctgcctctcctcgagtt
gggtcaagccagtacaaaattctcctggctttcattgaggaagagctaaagaatgttagg
aataccacatcactgatttcctgtgtggatcagttggtcggtaccgttcctgtgtggttg
gaaggaaggctgctgggttacctctcacctaacgaggctctgagtgcctccaaagctctc
acacagaagaaggcattacgaagccggggagttgtgggtgtcacaggtatcgtgaggcgc
gacagtataagttctctaaacactatggaggttgtctacataccgcctgggagcaaggat
ccaatggggttgtacatattttaccagtacggaagactcatgcgcccggtgctgcaaatt
gagtcgccgtctcgcggcggcgaccttccatttcctgtcgtttacctaggtacttgggag
cagtcgtggagggacattgctgccgtcccctccgacctttttgatggttttgaccaactg
agacgcaagtacgagtttatggaacaaaacgggttcaacatattgagcttcacttcctcg
acgattccattctttgaacataactgttctccccgtaacctttttcagtgtggattgtca
aaacagacggctggtacacaactccaaactcaggcatggcgacgggatgcgaagctcttc
cgcatgtactatccccaacgttatattagtcgtacactcccgatggattactttggccta
gatgacgtaagcttgggagttaatgcggtggttgccatccttgcctacacaggctatgat
ttggacgatgccatgatactaaacagcacagcgaaacaatttggtatgcttaatgctggt
gttaccgttgcaaagatcgtaaaagccagtgggaaaggagacagcaacgatgtcttcgtg
tttcacaactgtcttccagatgggcagcccttcacaccggagttggatcgtcacggcctt
ccaaaaaagcgtgcagtgcccaatgcaacggcgtatttctcgtttgataccgatcacaaa
tatccgtcgttgagggatagcagtgcagtgtattgttgtgccaagcgctttgagtacatc
gacccattaaccaatgagaagacttatgaatacacacgtcaccaaataacgaagtggagg
cactttgacaaaggtgaggatgcatgggtccacagcgtcattccactaacatatgacgga
ccggaccccaccagtgtgctggttttgttccgtatcccgcgcccgcctgttatcggtgac
aaattttcctcgcgccatggacagaaggggacacttccccttgacatacgctctcacgat
ttaccgttcagcacacgtgatggtattacgcctgacattattatcaaccctcatgctttc
ccctcccgcatgacagtaggcatggtgctggagatgatgggtgcgaagctgggctgtatc
caaggtcggttgtgcgatcatagtgcatggagtgttattgatgagcagccccgatccgct
aaaacgattggcgacgcccttgaggcactcggttacaaccgatatggccgtgagaaactt
atagatggcataactggggaggaaatcgaagctgaagtattggtaggcatctcgggatac
cagcgcttgcggcacatggtaagtgacaagtggcaggcgcgggccaggacagattctcac
actcatcgagcagtgacgaaaacagggcaaccagtgaagggacgtaagcgccacggtggc
gtccgcgtcggtgagatggagcgtgatgcgttgctttcccacggtgtggctgaggtcgtt
atcgacaggctgcttcatgtgtccgataaaacgaaggcttttatttgtgttgagtgcggc
tctatgctgtccatttacgaacgacacgcaacagaatattcaacgtggaaaacgtgcaaa
ttctgcagtgcaggtctgcacgagacagatgacacaatagctttcgttgagatcccgcag
gtgcttcgtctctgggcaacggagcttacaagcgtcggcattcgagttgtgctgaagacc
agtgaaacatccttgtaa
DBGET
integrated database retrieval system
