Trypanosoma brucei brucei: Tb927.4.5020
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Entry
Tb927.4.5020 CDS
T01013
Name
(RefSeq) RNA polymerase IIA largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03020
RNA polymerase
tbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tb927.4.5020
09124 Replication and repair
03420 Nucleotide excision repair
Tb927.4.5020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbr03021
]
Tb927.4.5020
03400 DNA repair and recombination proteins [BR:
tbr03400
]
Tb927.4.5020
Enzymes [BR:
tbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tb927.4.5020
Transcription machinery [BR:
tbr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
Tb927.4.5020
DNA repair and recombination proteins [BR:
tbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Tb927.4.5020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
PspA_IM30
Motif
Other DBs
NCBI-GeneID:
3657041
NCBI-ProteinID:
XP_844651
UniProt:
Q584K3
LinkDB
All DBs
Position
4:complement(1373829..1379126)
Genome browser
AA seq
1765 aa
AA seq
DB search
MSGGAALPVSQMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMG
TTDFEFACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKTCGALLLNTRE
QDVHKKLQHMTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRG
CGASQPRVSRFYGIYPTLVIKAVHEEQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHP
RDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAIDRSR
ALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVI
TGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKL
ALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCT
TPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLT
DKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPF
PHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLL
NFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADV
NSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFG
FRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQ
RKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPFRDDKEMEDTY
KYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQEEYEQLTADREWSRKMLDLEDR
DKLKLNLPVNPGRLIQNARSTMGKRSQVSNLSPITIIDHVRKLQEDLMKLFPSYHRGGDG
YIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTP
GENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSRNQKHASMTVSL
FPPYDEKRNAQKAQHLIEYCTLESITRRIQFIYDPDPRHTVVEADRDILELEWNVMDESD
AELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDESYIIETGMANNVRQRT
IRMRSRYNEGADSIPKLKREIPALLARVHLRGIPGVRRALLKDTTEFTVDQATGKMSGNK
IWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREA
YLAYGLNINYRHYTILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAAS
FGECDPVRGVSANLVLGNQARVGTGLFDLVLNMAALQQAVPQAEAVAPGKDVNVYHSLGS
TLQQNIQSSIAYRPRDHDATPFVNNASLFLRQGFGGGSSSAPVTASAPYNPSTTYHGGRL
EASAVHRSQAYSTSPALEYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEAS
SYHLQHSVAPTSMQASLPRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSH
SEDSRSQSALYVPTLSPTHAGYAIRGDEPSTHRSDSNVMWREAGGGREQDEEDDLSTNYM
PTAKTPQQVAPPTAAEFGDEEEEEQ
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggtgcggccctaccggtttcccagatggagttgcagaaggtgaatgaagta
cagttcgagatatttaaggaaaggcaaatcaaaagttacgccgtgtgccttgtcgagcac
gccaagtcgtatgaacgcggccgaccagtccggggaggcatcaatgatttgcgtatgggt
accactgacttcgaattcgcatgcgagacatgccataggaagcacccagagtgccctgga
cacttcggatacatcgagctcgcagagcctgtctttaatattggcgtcttcgatcttgta
ctgcaggtgttgaagtgtgtttgcaaaacgtgcggggctctcctccttaacacgcgcgaa
caggacgtacataagaagttgcagcacatgacaggcctcaaccgtcttcggcaagttgcg
aagatggctgaggcaaagtgccgcgtctccaccagcaccgaagacgatatggggattgac
ggctttgatagtgcccctttcaatggcggatcaggaatggggccaggcgcgacacggggt
tgtggtgcgtctcaaccccgcgtaagtcgcttttatggtatctacccaacactcgttatc
aaggcagtacatgaggaacaagacgccgagtggcacgctgataaggtgcgacaggtactt
gaccgcgtgtccgatgatgatgcccgcttgatgggcttcgaccctcaacgttgccaccca
cgggatcttgtgctcactgtgcttccagttccacccccgcaggtgcggcccgcaatatcc
ttcggcggtctcaggtcagatgatgaactcacgcatcagatcatgtccattgtgaaacga
aacaaccaactacgcagggataaggagtcagacgtgcaggcagcaattgaccggagccgg
gcgttattgcaagaacatgtggcgacatatttcaataacgcttccacatactataagcca
acgaaggtgaatgacacaaagaagctaaagtcattaacggagcgcttgaaggggaagtac
ggtagactgcgtggaaatctaatggggaagcgggtggacttctccgctcgaaccgtcatc
acaggcgatccgaacattgacgtggatgaagtaggtgtacccttttctgtcgcgatgacg
cttacattccccgagcgagtgaacacagtaaataagaagcgactgacggagtttgcccgg
cgcacggtctacccgtcggcgaattacatacaccatccgaatggcaccataacaaaactc
gcgctcttgcgtgaccgctccaaggtgacgctaaacatcggtgacgttgtggagaggcat
gtgattaatggggatgtcgtcttgttcaaccgacagccgacattgcatcgcatgagtatg
atgggccacagggttcgggttctcaactataacactttccggcttaatctctcttgtacc
acaccatacaatgctgacttcgatggtgacgaaatgaatttgcacgtgccgcagagtctc
ttaacgaaagcagagctgattgaaatgatgatggttccaaagaacttcgtctcgcccaat
aagtctgctccgtgcatgggtattgtgcaagacagtctgctgggtagttaccggttgacg
gacaaggacacattcctcgataagtactttgtgcaaagcgtggcactttggctggatctt
tggcagttacccattcccgccattctgaaaccccgacccctctggaccggaaagcaggta
ttttcacttatccttcctgaggttaaccatccagcaacaccacaggaccggccccccttt
cctcacaatgattccgtagtgatgatacgacgtggtcagttgttatgtggaccaatcact
aagagtatcgttggtgctgcaccggggtcactcattcacgttatatttaatgagcacgga
tctgatgaagtggcacgcttcatcaacggcgtgcagcgcgtgacgacgtttttcttactt
aacttcggtttcagcgttggggttcaagacaccgtagctgacagtgacaccttgcggcag
atgaatgatgtcctcgtgaaaacacggaggaatgttgaaaaaattggtgcggctgccaac
aaccgtacactgaaccgcaaggctggtatgacacttctgcagtcattcgaagcagatgtc
aacagcgcactgaacaagtgccgcgaagaggcagcaaagaaggcactgagcaacgtccgt
cgcactaacagcttcaaggtgatgattgaagcgggcagtaagggtacagatctgaacata
tgtcaaattgccgtctttgttgggcaacaaaacgtcgcgggaagccgtattccattcggt
tttcgtaggcgcacgcttccacactttatgcttgacgattatggtgagacgtcacgcggc
atggcaaaccgtggttacgttgagggtctgaaaccgcacgagttttttttccacaccatg
gctggtcgtgagggtttgatcgatactgcggtgaaaacctctgatacaggctacctgcag
cgtaagcttatcaaggcgctagaagatgtccacgcagcctacgacggtactgtgcgaaat
gcaaacgatgaactaattcagtttatgtacggtgaagacggtcttgacggggcccgtata
gagggtgggcagctgttccctcttccctttcgggacgataaggagatggaagacacgtac
aaatatgagtacgacgtggatggcaccttcagtgggaaggttggtggtaactatatggat
ccccacgttaggaagatgctacgcgctgatccccaaaatgttcggaaacttcaggaagaa
tatgaacagcttacggcggaccgcgagtggtcacgcaaaatgcttgacctcgaggatcgt
gataaactgaagcttaacctccctgttaatccaggtcgacttatccaaaacgcgcgcagt
actatgggcaaacgtagtcaagtgtccaacctgagccccatcactattatcgaccacgtg
cggaagcttcaagaagatctcatgaaactctttccatcttaccaccggggaggggatgga
tacatcaggaatacgctgagtcgtgagcgcattgaaagtgcgcttactctcttcaacgtt
catttgaggcagctacttgcgtcaaaaagggtgctgaaggaatataaacttaacgatagg
gcttttgagtatcttctcaaggaaattagaaccaagtaccaccagtcactcaccacaccg
ggtgagaacattggggcaatcgctgcgcagtcgtgtggtgaacctgccacacaaatgaca
cttaacacgttccacaatgcgggaatttcctcaaagaacgttaccctcggtgtgccacgt
ttactggagcttctaaacgtctcacgaaaccaaaagcacgcgagcatgacagtgtctctg
tttccaccatatgatgaaaagcgaaatgcgcaaaaggcccagcatctcattgaatactgc
acgctggagagtatcacaaggcgcatacagttcatctacgaccctgacccacgtcacacc
gttgtggaggctgatcgtgacatcctagaactagagtggaatgttatggatgaaagcgat
gcagagctaagaatacaggaggtagtagcaggttcgccatgggtggtgaggttggagctc
gacgtggatatggtcaccgacaaggccctcgatatgaaggatgtgaagcaagctatcctg
cgagtggatgaaagctacataattgaaacgggaatggctaacaatgtgcgccagcggacc
ataagaatgcggtccagatataacgaaggagctgactcgatcccaaagcttaagcgtgaa
atcccagcccttcttgcgcgggttcacttgcgtggtattcccggtgtgcgtcgggcgctg
ctgaaggacaccaccgaattcactgtagatcaggcaacggggaaaatgagtggcaacaaa
atatgggcaatagacacggacggcacggcattgcgacgtgcttttattggtgtcgtaggt
gaggatggtaagaacattattaatgcggtgaaaacgagtagcaacaaagtgcctgaggta
tgtagtcttcttggtattgaggcggcgagatcaaagatgttgacggaacttcgtgaggct
tacctggcctatggtctcaatattaactaccgccactatactatactggtggatacgata
tgtcagcatgggtacctgatggctgtttctcgctcaggaatcaaccgctccgatacgtcg
ggtccgttgatgcgctgttcatttgaagaaactgttaaggtgcttatggcggctgcatct
tttggcgagtgcgatcccgtgcgtggggtatcagcaaatcttgtgctcggtaaccaagcg
cgcgttggtacggggcttttcgatcttgttctcaacatggcagcgctgcagcaggctgta
ccgcaggcagaagcggttgcacccggaaaggatgtaaatgtgtatcacagtctcgggtcc
acgctgcagcaaaatatccaatcctccattgcgtaccgaccaagagatcatgatgcaaca
ccgtttgtaaacaatgccagtctgtttctccgccagggtttcggtggggggtcctcctcc
gcaccagtaacggcctcggccccatacaacccttcgacgacgtaccacggcggtcggctc
gaagcgagcgcagtgcacaggagtcaagcttattctacatcccccgctttggaatacgga
gggcgggaagcaagcgcctcacaaatgtacagcgttatgtcttccgccagcgcgttcaac
ccagtttcaacgcggatgtcgtcagtggcacacagttattccgaatacagtgaagcctct
tcttaccacctgcaacacagcgtggcgccaacttccatgcaagcttcactaccaagaacc
gacaactctatgaccatgcaaggtatcggtagtgtttcagtaccgtacacgccccatgcc
atgtccagtgctgccccaccgtcgcaggtatacgccagcacagaagtcggccggtcgcac
agcgaggactcgcggtcccagtcagctctctacgttccgacactctcacccacccacgcg
ggttacgctatacgaggtgatgagccatccacacatcgtagtgactcaaatgtcatgtgg
cgggaggctggcgggggaagggaacaggatgaggaagatgacctctccacgaattatatg
cccactgcaaagacaccccagcaggtggcaccgccgacagccgcagagtttggggacgag
gaagaggaagaacagtaa
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integrated database retrieval system