KEGG   Trypanosoma brucei brucei: Tb927.4.5020
Entry
Tb927.4.5020      CDS       T01013                                 
Name
(RefSeq) RNA polymerase IIA largest subunit
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03020  RNA polymerase
tbr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tb927.4.5020
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tb927.4.5020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tbr03021]
    Tb927.4.5020
   03400 DNA repair and recombination proteins [BR:tbr03400]
    Tb927.4.5020
Enzymes [BR:tbr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Tb927.4.5020
Transcription machinery [BR:tbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     Tb927.4.5020
DNA repair and recombination proteins [BR:tbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Tb927.4.5020
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7 PspA_IM30
Other DBs
NCBI-GeneID: 3657041
NCBI-ProteinID: XP_844651
UniProt: Q584K3
LinkDB
Position
4:complement(1373829..1379126)
AA seq 1765 aa
MSGGAALPVSQMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMG
TTDFEFACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKTCGALLLNTRE
QDVHKKLQHMTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRG
CGASQPRVSRFYGIYPTLVIKAVHEEQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHP
RDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAIDRSR
ALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVI
TGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKL
ALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCT
TPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLT
DKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPF
PHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLL
NFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADV
NSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFG
FRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQ
RKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPFRDDKEMEDTY
KYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQEEYEQLTADREWSRKMLDLEDR
DKLKLNLPVNPGRLIQNARSTMGKRSQVSNLSPITIIDHVRKLQEDLMKLFPSYHRGGDG
YIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTP
GENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSRNQKHASMTVSL
FPPYDEKRNAQKAQHLIEYCTLESITRRIQFIYDPDPRHTVVEADRDILELEWNVMDESD
AELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDESYIIETGMANNVRQRT
IRMRSRYNEGADSIPKLKREIPALLARVHLRGIPGVRRALLKDTTEFTVDQATGKMSGNK
IWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREA
YLAYGLNINYRHYTILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAAS
FGECDPVRGVSANLVLGNQARVGTGLFDLVLNMAALQQAVPQAEAVAPGKDVNVYHSLGS
TLQQNIQSSIAYRPRDHDATPFVNNASLFLRQGFGGGSSSAPVTASAPYNPSTTYHGGRL
EASAVHRSQAYSTSPALEYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEAS
SYHLQHSVAPTSMQASLPRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSH
SEDSRSQSALYVPTLSPTHAGYAIRGDEPSTHRSDSNVMWREAGGGREQDEEDDLSTNYM
PTAKTPQQVAPPTAAEFGDEEEEEQ
NT seq 5298 nt   +upstreamnt  +downstreamnt
atgtcaggtggtgcggccctaccggtttcccagatggagttgcagaaggtgaatgaagta
cagttcgagatatttaaggaaaggcaaatcaaaagttacgccgtgtgccttgtcgagcac
gccaagtcgtatgaacgcggccgaccagtccggggaggcatcaatgatttgcgtatgggt
accactgacttcgaattcgcatgcgagacatgccataggaagcacccagagtgccctgga
cacttcggatacatcgagctcgcagagcctgtctttaatattggcgtcttcgatcttgta
ctgcaggtgttgaagtgtgtttgcaaaacgtgcggggctctcctccttaacacgcgcgaa
caggacgtacataagaagttgcagcacatgacaggcctcaaccgtcttcggcaagttgcg
aagatggctgaggcaaagtgccgcgtctccaccagcaccgaagacgatatggggattgac
ggctttgatagtgcccctttcaatggcggatcaggaatggggccaggcgcgacacggggt
tgtggtgcgtctcaaccccgcgtaagtcgcttttatggtatctacccaacactcgttatc
aaggcagtacatgaggaacaagacgccgagtggcacgctgataaggtgcgacaggtactt
gaccgcgtgtccgatgatgatgcccgcttgatgggcttcgaccctcaacgttgccaccca
cgggatcttgtgctcactgtgcttccagttccacccccgcaggtgcggcccgcaatatcc
ttcggcggtctcaggtcagatgatgaactcacgcatcagatcatgtccattgtgaaacga
aacaaccaactacgcagggataaggagtcagacgtgcaggcagcaattgaccggagccgg
gcgttattgcaagaacatgtggcgacatatttcaataacgcttccacatactataagcca
acgaaggtgaatgacacaaagaagctaaagtcattaacggagcgcttgaaggggaagtac
ggtagactgcgtggaaatctaatggggaagcgggtggacttctccgctcgaaccgtcatc
acaggcgatccgaacattgacgtggatgaagtaggtgtacccttttctgtcgcgatgacg
cttacattccccgagcgagtgaacacagtaaataagaagcgactgacggagtttgcccgg
cgcacggtctacccgtcggcgaattacatacaccatccgaatggcaccataacaaaactc
gcgctcttgcgtgaccgctccaaggtgacgctaaacatcggtgacgttgtggagaggcat
gtgattaatggggatgtcgtcttgttcaaccgacagccgacattgcatcgcatgagtatg
atgggccacagggttcgggttctcaactataacactttccggcttaatctctcttgtacc
acaccatacaatgctgacttcgatggtgacgaaatgaatttgcacgtgccgcagagtctc
ttaacgaaagcagagctgattgaaatgatgatggttccaaagaacttcgtctcgcccaat
aagtctgctccgtgcatgggtattgtgcaagacagtctgctgggtagttaccggttgacg
gacaaggacacattcctcgataagtactttgtgcaaagcgtggcactttggctggatctt
tggcagttacccattcccgccattctgaaaccccgacccctctggaccggaaagcaggta
ttttcacttatccttcctgaggttaaccatccagcaacaccacaggaccggccccccttt
cctcacaatgattccgtagtgatgatacgacgtggtcagttgttatgtggaccaatcact
aagagtatcgttggtgctgcaccggggtcactcattcacgttatatttaatgagcacgga
tctgatgaagtggcacgcttcatcaacggcgtgcagcgcgtgacgacgtttttcttactt
aacttcggtttcagcgttggggttcaagacaccgtagctgacagtgacaccttgcggcag
atgaatgatgtcctcgtgaaaacacggaggaatgttgaaaaaattggtgcggctgccaac
aaccgtacactgaaccgcaaggctggtatgacacttctgcagtcattcgaagcagatgtc
aacagcgcactgaacaagtgccgcgaagaggcagcaaagaaggcactgagcaacgtccgt
cgcactaacagcttcaaggtgatgattgaagcgggcagtaagggtacagatctgaacata
tgtcaaattgccgtctttgttgggcaacaaaacgtcgcgggaagccgtattccattcggt
tttcgtaggcgcacgcttccacactttatgcttgacgattatggtgagacgtcacgcggc
atggcaaaccgtggttacgttgagggtctgaaaccgcacgagttttttttccacaccatg
gctggtcgtgagggtttgatcgatactgcggtgaaaacctctgatacaggctacctgcag
cgtaagcttatcaaggcgctagaagatgtccacgcagcctacgacggtactgtgcgaaat
gcaaacgatgaactaattcagtttatgtacggtgaagacggtcttgacggggcccgtata
gagggtgggcagctgttccctcttccctttcgggacgataaggagatggaagacacgtac
aaatatgagtacgacgtggatggcaccttcagtgggaaggttggtggtaactatatggat
ccccacgttaggaagatgctacgcgctgatccccaaaatgttcggaaacttcaggaagaa
tatgaacagcttacggcggaccgcgagtggtcacgcaaaatgcttgacctcgaggatcgt
gataaactgaagcttaacctccctgttaatccaggtcgacttatccaaaacgcgcgcagt
actatgggcaaacgtagtcaagtgtccaacctgagccccatcactattatcgaccacgtg
cggaagcttcaagaagatctcatgaaactctttccatcttaccaccggggaggggatgga
tacatcaggaatacgctgagtcgtgagcgcattgaaagtgcgcttactctcttcaacgtt
catttgaggcagctacttgcgtcaaaaagggtgctgaaggaatataaacttaacgatagg
gcttttgagtatcttctcaaggaaattagaaccaagtaccaccagtcactcaccacaccg
ggtgagaacattggggcaatcgctgcgcagtcgtgtggtgaacctgccacacaaatgaca
cttaacacgttccacaatgcgggaatttcctcaaagaacgttaccctcggtgtgccacgt
ttactggagcttctaaacgtctcacgaaaccaaaagcacgcgagcatgacagtgtctctg
tttccaccatatgatgaaaagcgaaatgcgcaaaaggcccagcatctcattgaatactgc
acgctggagagtatcacaaggcgcatacagttcatctacgaccctgacccacgtcacacc
gttgtggaggctgatcgtgacatcctagaactagagtggaatgttatggatgaaagcgat
gcagagctaagaatacaggaggtagtagcaggttcgccatgggtggtgaggttggagctc
gacgtggatatggtcaccgacaaggccctcgatatgaaggatgtgaagcaagctatcctg
cgagtggatgaaagctacataattgaaacgggaatggctaacaatgtgcgccagcggacc
ataagaatgcggtccagatataacgaaggagctgactcgatcccaaagcttaagcgtgaa
atcccagcccttcttgcgcgggttcacttgcgtggtattcccggtgtgcgtcgggcgctg
ctgaaggacaccaccgaattcactgtagatcaggcaacggggaaaatgagtggcaacaaa
atatgggcaatagacacggacggcacggcattgcgacgtgcttttattggtgtcgtaggt
gaggatggtaagaacattattaatgcggtgaaaacgagtagcaacaaagtgcctgaggta
tgtagtcttcttggtattgaggcggcgagatcaaagatgttgacggaacttcgtgaggct
tacctggcctatggtctcaatattaactaccgccactatactatactggtggatacgata
tgtcagcatgggtacctgatggctgtttctcgctcaggaatcaaccgctccgatacgtcg
ggtccgttgatgcgctgttcatttgaagaaactgttaaggtgcttatggcggctgcatct
tttggcgagtgcgatcccgtgcgtggggtatcagcaaatcttgtgctcggtaaccaagcg
cgcgttggtacggggcttttcgatcttgttctcaacatggcagcgctgcagcaggctgta
ccgcaggcagaagcggttgcacccggaaaggatgtaaatgtgtatcacagtctcgggtcc
acgctgcagcaaaatatccaatcctccattgcgtaccgaccaagagatcatgatgcaaca
ccgtttgtaaacaatgccagtctgtttctccgccagggtttcggtggggggtcctcctcc
gcaccagtaacggcctcggccccatacaacccttcgacgacgtaccacggcggtcggctc
gaagcgagcgcagtgcacaggagtcaagcttattctacatcccccgctttggaatacgga
gggcgggaagcaagcgcctcacaaatgtacagcgttatgtcttccgccagcgcgttcaac
ccagtttcaacgcggatgtcgtcagtggcacacagttattccgaatacagtgaagcctct
tcttaccacctgcaacacagcgtggcgccaacttccatgcaagcttcactaccaagaacc
gacaactctatgaccatgcaaggtatcggtagtgtttcagtaccgtacacgccccatgcc
atgtccagtgctgccccaccgtcgcaggtatacgccagcacagaagtcggccggtcgcac
agcgaggactcgcggtcccagtcagctctctacgttccgacactctcacccacccacgcg
ggttacgctatacgaggtgatgagccatccacacatcgtagtgactcaaatgtcatgtgg
cgggaggctggcgggggaagggaacaggatgaggaagatgacctctccacgaattatatg
cccactgcaaagacaccccagcaggtggcaccgccgacagccgcagagtttggggacgag
gaagaggaagaacagtaa

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