Theobroma cacao (cacao): 18587096
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Entry
18587096 CDS
T02994
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18587096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18587096
Enzymes [BR:
tcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18587096
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
18587096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
SprT-like
Motif
Other DBs
NCBI-GeneID:
18587096
NCBI-ProteinID:
XP_017985026
LinkDB
All DBs
Position
10:18064477..18079786
Genome browser
AA seq
1180 aa
AA seq
DB search
MERQRRKRPGPFSDAEELEELKELFKHHIESFDYMIDEGLDLMLKRVKPVQIFDSSSNKT
LRIWLDHPEVYPPQKDRSSKTSAGALYPFECRQAKISYTGSFHIDVCFQWDGGVVVREKL
NFGEFPIMLKSKRCYLREADPRKLVACKEESREMGGYFILNGLERVVRLLILPKRNYPMS
LVRNSFRDRREGYTDKAVVIRCVRGDLSSVTVKLYYLHNGSARLGFWVQGREYMLPVGII
LKALIDTNDREIYTKLTCCYNEKNGEGKGAVGTQLVGERAKIILDEVQHLALFTQEQCLQ
HIGEHFQPIMEGMESESYSTVADVVLRNYIFVHLDDNNDKFNLLIFMVQKLFSLIDQTSA
PDNSDSLQNQEVLLPGHLITIYLKEKLEDWLRKGKKLIEDAINNKSKNFDFCSMKDVKKV
MEKNRPTQVSAAIENLLKTGRLITQTGLDLQQRAGFTVQAERLNYHRFLSFFRCVHRGAS
FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSYYNSPGNIRDFFKIR
MSILDVLVGVGMTTSWPKVDHAGPPQVLPVLLDGRVVGSLPSGEAEKVVAHLRRLKLAAA
SVIPDDLEVGYVPLSLGGTYPGLYLFTSPSRFVRPVRNISIPSADGKDIELIGPFEQVFM
EIRCPDGGNGGRSNIFPATHEEISPTAMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAF
SLQAINARADQKLYHLQTPQTPIVRTKTYTKYCMDEYPSGTNAIVAVLAYTGYDMEDAMI
LNKSSVERGMCHGQIYQTETIDLGDDKSKSDRGQRIFKREHSDRSISSCLDSDGLPHVGQ
VIRPNEPYCSTINQVTNSKRLYNHKGSETVIVDYVAVDTKSKKHLQKANIRFRHPRNPVI
GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG
SLHGKFVDATPFSDSVKEAKGKTETESESLVDELGSMLRARGFNYHGVEVLYSGVYGTEL
TCEIFIGPVYYQRLRHMVSDKYQVRATGQVDQITRQPIKGRKRGGGIRFGEMERDAMLAH
GAAYLLHDRLHTCSDYHIADVCSLCGSILTTSIVQPPKRVVREIGGLPPARAPKKVTCHA
CQTSKGMETVAMPYVFRYLAAELAAMNITMTIQLNSGAGA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggcagaggaggaagaggccggggccgttttcggacgcggaagagctagaagaa
ctaaaggagctattcaaacaccatatcgagtcgttcgattacatgatcgacgaaggctta
gaccttatgcttaagcgcgtcaagcctgtccaaatcttcgattcttcctccaataaaacc
cttagaatctggctggatcatccggaggtctatccaccgcagaaggaccggtcatcaaag
acatcagcaggagctttgtatccatttgaatgtagacaagcaaaaatttcttacacaggg
agtttccatatagatgtttgctttcagtgggatggtggagttgttgtaagagaaaagtta
aattttggagagtttcctataatgttaaagtcaaaacgttgttacttgcgagaagctgat
cccagaaaactggttgcttgcaaagaagagtcgcgagaaatgggtggttacttcattctg
aatgggcttgagagagtagttcgacttttgatattgccgaaacggaattatccaatgagt
ttggtacgtaattcatttcgtgatcgtcgggaagggtatactgataaagcagttgtcata
aggtgtgtgagaggagatctatcatcagtgacagttaagttatattatcttcataatgga
agtgcaagacttggattctgggtacaggggagggaatacatgcttcctgtgggcattata
ctaaaggctctgattgacactaatgatcgtgaaatttatacaaaattgacatgctgctat
aatgagaaaaatggtgaaggaaagggggctgttggcactcaactcgttggtgaaagggcc
aagattattcttgatgaagttcagcacttggctcttttcactcaggagcagtgtctacag
catattggggaacacttccaacctattatggagggaatggaaagtgagagttattctact
gttgctgatgtggtgctgaggaattacatatttgttcacttggatgacaacaatgacaag
tttaatctgctcatctttatggtgcagaaacttttctcacttatagatcaaacttctgca
ccagataactcagattccttgcaaaatcaggaagttttactccctggtcatctcattacc
atttaccttaaggagaaactggaagattggttgcgcaaaggaaagaagcttattgaagat
gcgattaataacaaaagcaaaaattttgatttctgcagcatgaaagatgtcaagaaggtg
atggaaaaaaatcgtccaacgcaagtcagtgcagcaattgagaatttgttgaaaactgga
agattgataacacagacaggtctagatttacagcagagggctggtttcacggttcaggca
gagaggcttaactatcatcgatttctttcgttttttcggtgtgttcatcgtggggcttca
ttcgccggacttcgtacgaccagtgttaggaagttgttacctgaatcttggggttttctt
tgccccgtgcacactcctgatggggagccttgtgggttgttgaaccacatgacatgtact
tgtcgaattacatcctactacaattcgccaggaaatattagagatttttttaaaataaga
atgtctatccttgatgttctagttggggttggaatgacaacttcttggccaaaagttgat
catgctggacctcctcaagttcttcctgttcttttagatggtcgtgttgtgggctcttta
ccttctggtgaagctgaaaaagttgttgctcatttgcggagattgaaattagcagctgct
tcagtgattcctgatgacttggaagtcggctatgttcctttgagcttgggtggcacgtat
cctggtttgtacctgtttacttctccatctagatttgttcggcctgtcagaaatatttct
atcccttcggcagatgggaaggatattgaacttattgggccatttgaacaggttttcatg
gaaatcagatgtccagatggtgggaatggaggaagaagtaatatttttcccgcaactcat
gaagaaattagtccaactgcaatgcttagtgtggttgctaatcttacgccttggtcagac
cataatcaaagtccacggaatatgtatcagtgccagatggcaaaacaaacaatggctttt
tctttacaagcaattaatgcacgtgcagatcaaaagttgtatcatcttcagactcctcaa
actccaattgtgcgcacaaaaacatatacaaagtactgcatggatgaatatccttcagga
acgaatgcaatagtagctgtgctggcatatacagggtatgatatggaggatgccatgatt
ttgaataagtcatctgtggaacgtgggatgtgtcatggacaaatataccagacggaaact
attgacttgggtgatgataagagcaagtcagatcgaggtcaaagaatttttaaaagagaa
cattcagataggtcaatatcttcttgtcttgattcagatggacttccacatgttggtcag
gtgatacgcccaaatgaaccttattgtagcaccattaatcaggtgacaaattcaaagaga
ctctacaatcacaagggttcagaaactgttattgttgactatgttgcagttgataccaaa
agcaagaagcatcttcagaaggctaatattcgctttcgacatccgagaaaccctgtcatt
ggtgataaatttagcagtagacatgggcagaaaggtgtttgctctcagttgtggccagat
attgatatgccattctcaggagttacaggaatgcgccctgatcttataatcaatcctcat
gcatttccctcaaggatgacaattgcaatgcttttggaatctgttgctgctaagggagga
agcttacatgggaaatttgtggatgcaacaccattttctgattcagtgaaggaagctaaa
ggaaagactgagacagagtctgagtctcttgttgatgaacttggttccatgttaagagct
cgtgggtttaactaccatggagtagaggtattatacagtggggtctatggaacagaacta
acatgtgagatatttattggccctgtttattaccagcggcttagacacatggtttctgac
aaatatcaggttcgtgccactggacaagtcgaccagattacacgacagcctatcaaagga
agaaagcggggtggaggtatacgttttggggaaatggaacgagatgctatgcttgctcat
ggggctgcgtatctgttgcatgataggctccatacatgttctgattatcacattgctgac
gtctgctctctgtgtggaagcatccttacgacgtccattgtccagccaccaaagcgagta
gttcgagagattggtgggttgcctcctgcaagggctccaaagaaggttacatgtcatgca
tgccagacaagcaaagggatggagaccgtcgcaatgccttacgtttttagatatttggct
gctgagttggcagctatgaacataacaatgaccatacagcttaatagtggagctggggct
tga
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