KEGG   Theobroma cacao (cacao): 18588559
Entry
18588559          CDS       T02994                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03020  RNA polymerase
tcc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18588559
  09124 Replication and repair
   03420 Nucleotide excision repair
    18588559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    18588559
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18588559
Transcription machinery [BR:tcc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     18588559
  RNA polymerase III system
   RNA polymerase III
     18588559
  RNA polymerase I system
   RNA polymerase I
     18588559
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18588559
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 18588559
NCBI-ProteinID: XP_007013104
UniProt: A0A061GMW8
LinkDB
Position
9:5553276..5555879
AA seq 206 aa
MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK
RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK
FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYG
LKRGQVVKIIRPSETAGRYVTYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggttctatcggatgatgaaatcaagaggttgtttcgaatccgaaaaacggtaatgcag
atgttgaaagataggggttatttcgtgggagactttgagattaccatgaccaaagctcaa
tttatttccaaatatggcgaaaacatgaaaagggaagatctggttatcaataaaactaag
cgaaacgacaactctgatcagatctatgtttttttccctgatgaagccaaggttggtgtc
aagacaatgaagacgtatactaaccgcatgaaatcagagaatgtattcagggctgtactg
gttgtgcaacagaatttaactccctttgcccggacatgtattaatgaaatttcttcaaaa
tttcacttggaagttttccaggaatcagagctcctggtcaatgtaaaagaacattctctt
gttcctgagcatcaggtgcttactaatgaggagaaaaagactctgctgcaaagatatact
gtaaaggaaacacagctgccccgtattcaggtgagcgatccaattgcaagatactatggg
ctgaagcgtggacaagttgtgaagataattcggcccagtgagactgctggtcgttatgtc
acctaccgatatgttgtctaa

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