Theobroma cacao (cacao): 18603906
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Entry
18603906 CDS
T02994
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18603906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18603906
Enzymes [BR:
tcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18603906
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
18603906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
P4Ha_N
Motif
Other DBs
NCBI-GeneID:
18603906
NCBI-ProteinID:
XP_017973127
LinkDB
All DBs
Position
3:708146..723083
Genome browser
AA seq
1395 aa
AA seq
DB search
MQQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDP
RMGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILD
EKLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAML
GIIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYL
SDRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAF
KCLGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYT
GRTVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYP
DGSARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT
LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF
LTSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPH
ASVRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGN
GNKDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTI
SGDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSP
LIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANS
FYSGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCI
VQFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMPMLEEQLAKH
DPAGVCSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQKSEILEKVGHKISGISDRQLEVF
VSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII
NAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVVITLDM
EIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPPADRSQIHFELHSLKN
LLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGMGLQAVMGIEGIDGRRT
WSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEVLGITRF
GIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGILKVIQRV
DPPPMLRYGPDPVLS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaaaatttacaaaacggccgtacatcgaagatgtcgggccgcgaaaaataaaa
agcattcaattttctatgttatcagattcggagatagccaaagctgctgaagttcaagtt
tatcaagctctttactatgatcctaaaagccgccccatcgaaggcggcttattggatccc
cgaatgggtcctgcaaataaaagcgggaaatgtgcaacctgccatggaaattttgcggat
tgcccaggccattacggatacttatctcttgcccttcctgtttataatgttggatattta
agtacaattttagacattttaaagtgcatctgtaagtcttgttctcgtataattttggat
gagaaattatgcaaagattatctgaagaggatgagaagtccgaagatcgatgcattaaag
aagggtgatataatgaaaagtatcgtgaagaagtgtagtgctatggctagtagtaaagct
gtgaagtgctggagatgtggatatgtaaatggtacggtgaagaaggctgtggcaatgttg
ggcattattcatgatcgttcaaaaattaatgacaacagtttggaagaatttagatcagca
atttcccacacaaaggagtccaaggcatccttcaacgttgctacttatgttctaaaccct
gtcaaagtgctttctctttttaaaaggatgactgatttggattgcgaattgctatatctt
tctgatagacctgagaagctcataattacaaatattgctgtgccacctatacctatccga
ccttcagtcattatggatgggtcacagagcaacgaaaatgacattactgagaggttgaaa
cgaattattcaggcaaatgctagccttcgtcaggaattagtagaaacaaatgctgcattc
aaatgtctgggtggctgggagatgcttcaagttgaagttgcacagtacattaatagtgat
gttcgtggtgttccatttagtatgcaagtgtcaaagccgctgagtggttttgttcagcgc
atcaaagggaagcacggacgctttcgtggtaacttatctggcaaacgtgttgaatatact
ggccggactgttatatcacctgaccccaatctgaaaattactgaggtggctatcccaatc
catatggctcggattttgacttatccagaacgtgtttccaatcacaatatagagaagcta
aggcagtgtgttcgtaatggtccttcgaaataccctggtgcaaggatggtcagatatcct
gatggttcagctaggctcttgataggtgattacagaaagcgtcttgctgatgaactaaaa
ttcggttgtgtagttgatcgccatttagaagatggagatattgttcttttcaatagacag
ccaagcttgcatagaatgtctatcatgtgccatagggcgagaatcatgccgtggagaaca
ttgcgattcaatgagtctgtttgtaacccatataatgctgattttgatggtgatgaaatg
aacatgcatgtcccacaaacggaggaggctcgaacagaggcactcatgttgatgggggtg
caaaataatttatgcacgccaaaaaatggagaaattttggttgcttctactcaagatttt
ttaacatcttcctttctcattacaaggaaggatattttctatgatcgtgcagctttttct
cttatatgctcctatatgggtgatggcatggatcttatagatttgccgactccagcatta
cttaagccaatagagctttggactggtaagcaattgtttagtgttctattacgcccacat
gcgagtgtgagagtctacttgaatcttattgttaaggaaaggaactactccaagaagatt
atcaaaaggattggaaataaggaaatagaagtagaaacaatgtgcccagacgatggattt
gtctatattcggaatagtgagcttatatgtgggcaactggggaaggctactttaggaaat
ggcaacaaggatggactttattctgttcttctcagggactacaatgcacatgctgctgct
gcctgcatgaatcggttagctaaactgagtgctcgatggatagggaatcacggcttttca
attggaattgatgatgtccaaccggggaaaaggttgaatgatgagaaagcattaacaatt
tcaggagattataagaaatgtgatgaagagatacagacgttcaatgaaggaaaactaaag
cctaaacctggttatgatgctgctcaaacactagaagctaatgtaactgcaatattgaat
aacattcgggacaaaacggggaaggtatgcatgaaagaactacattggagaaacagtcca
ttgatcatgtcgcaatgtggttccaagggttctgctataaatataagtcaaatgattgca
tgtgttggtcagcaatcagttggtggtcgtcgtgctcctaatggattcatagatcgtagc
cttcctcattttcatagaggatcaaaaacccctgctgctaaaggctttgttgcaaattca
ttctacagtggtttgactgctacagagtttttctttcacacgatggctgggcgagaaggc
cttgtggatacagctgtaaaaacagctgagacaggatacatgtctcgtagactgatcaaa
gcattggaagacttgagcattcattatgataacaccgttcgcaatgcaagtggatgtata
gttcaatttatttatggagatgatggcatggatcctgcatgtatggagggaaaaagtgga
tttcctctgaattttgacagattgttaatgaaagtaaaggctacctgtcctccaatagaa
cagaaatgcttacacgttggttctatcatgccaatgttagaggagcagcttgctaaacat
gatcctgctggggtttgctctgaagccttcaaaaaatctctgaaagggttccttaaaagt
cagacgaacgaactagacagagtgatgaaattggttaacaattgtgcacagaagagtgag
atacttgagaaagttggccataaaatatctggtatatctgacaggcagttggaggttttt
gttagtacttgcatttctcgttatcgctctaaagtaattgaagctggaactgccattgga
gctattggagctcagagtattggtgaacctgggacacagatgacgctgaagacatttcac
tttgctggagttgcgagcatgaatattacacaaggagttcctcgtatcaaagaaatcata
aatgcagccaaaagaattagtactcccgtaattactgcagaacttgagtttgatgataat
ccgaacattgcacaaatagtaaaaggtcgaattgagaaaaccgttttagggcaggttgct
aagagcatcaagattgtaattacttcaagatcagcatcagttgttatcacccttgacatg
gaaataatcctagatgcagaattgtatatagatgcaaatattgtgaaagaatcaattttg
caaactccgaaaattaaactaaaggagcagcatgtgaaggttttggatggtagaaaattg
gaagttgttcctccagctgatagaagtcaaattcattttgaacttcattctcttaaaaat
ctgcttccactggttgtggtaaaggggataaaaactgttgaacgcactgttgtttatgac
aagaacaaagagaagaaaaatcagaaagaagaagagacaacgaagcatttccagttgctt
gtagaaggcatggggctccaagcagttatgggcattgaaggaattgatggacggaggaca
tggagtaaccatgtaatggaaatggagcagatattgggaattgaagctgcaaggaaatgc
ataatcgatgagatagcacaaactatggaacatcatggaatgactatagacagacgccat
atgatgcttctagcagatgtgatgacatttaggggggaagttcttggcatcacaagattt
ggaatccaaaaaatggacaagagtatattgatgctggcttcatttgagaggacagctgat
caccttttcaatgctgctgttaacgggagggatgacaagattgagggagttactgagtgc
atcatcatgggcatcccaatgcagataggcactggaatactcaaagttatacagagagtt
gatccacctcctatgctacgatatggaccagatccagttttatcttga
DBGET
integrated database retrieval system
