Theobroma cacao (cacao): 18613685 Help Entry 18613685          CDS       T02994                                  Name (RefSeq) DNA mismatch repair protein MSH6   KO K08737   DNA mismatch repair protein MSH6 Organism tcc  Theobroma cacao (cacao) Pathway tcc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:tcc00001]  09120 Genetic Information Processing   09124 Replication and repair    03430 Mismatch repair     18613685  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:tcc03400]     18613685 DNA repair and recombination proteins [BR:tcc03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     Mismatch and loop recognition factors      18613685 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MutS_V MutS_III MutS_I MutS_IV MutS_II PTM_DIR17_Tudor YL1 Motif Other DBs NCBI-GeneID:  18613685 NCBI-ProteinID:  XP_017983072 LinkDB All DBs Position 1:complement(31901027..31909976) Genome browser AA seq 1316 aa AA seqDB search MASSRRQSNGRSPLVNQQRQITSFFSKTNSPSPSPTISKQTSKLNPNSKPNRSPSKSPSP SPTTPSPVQSKLKKPLLVIGQTPSPTPSTPADKSYGKEVVDKRIRVYWPLDKAWYEGVVK SFDKESGKHLVQYDDAEEEELDLGKEKIEWIKESTGRLRRLRRGGSSSVFKKVVIDDEDE GVTENVEPESDDNDDDSSDEDWGKNVEQEVSEDAEVEDMDLEDGEEEEEENEEEMKISKR KSSGKTEAKKRKASGGGKLESGKKSKTNANVSKQELKVSLVEPVKKIESDKASNGFDNAL VGDASERFGKREAEKLHFLTPKERRDANRKRPEDVNYNPKTLYLPLDFLKSLSGGQRQWW EFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKGEQPHCGFPERNFSMNVEKLA RKGYRVLVVEQTETPEQLELRRKEKGAKDKVVKREICAVVTKGTLTEGEMLSANPDPSYL MAVTECCQSSTNQNEDRIFGVCAVDVATSRIILGQFGDDFECSGLCSLLAELRPVEIIKP TKLLSLETERAMLRHTRNLLVNELVPSAEFWDAGKTVCEVKNIYKRINDQSAARSVNHVG PNAANSCEGDGSCCLPAILSNLLSAGADGSLALSALGGTLYYLKQAFLDETLLRFAKFES LPSSGFSGIAQNPYMLLDAAALENLEIFENSRNGDSSGTLYAQLNHCVTAFGKRLLKTWL ARPLYHVDLIKERQDAVAGLKGENLSYALEFRKALSRLPDMERLLARIFASSKAIGRNAN KVILYEDAAKKQLQEFISALRCCELMVQACSSLGVILENLESTQLHHLLTAGKGLPNIHS ILKHFKDAFDWVDANNSGRIIPHEGVDMEYDSACERVKEIESSLTKHLKEQRKLLGDSSI TYVTVGKDVYLLEVPENLRGSVPRDYELRSSKKGFFRYWTQYIKKVIGELSQAESEKEMA LKNILQRLIGQFCEDHNKWRQLVSTTAELDVLISLAIASDFYEGPTCRPLILGSSCSNEV PCLSAKSLGHPILRSDSLGNGAFVPNDITIGGSGHASFILLTGPNMGGKSTLLRQVCLAV ILAQVGADVPAEHFKLSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATQHSLVA LDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYENNSKVSLCHMACQV GNGVAGVEEVTFLYRLTTGACPKSYGVNVARLAGLPDSVLLTAAAKSREFESAYGKHRKG SEDDLPMQSCADKMVAFIRELISLTANANCLNTYEDSCINSLTELQHRARILLQQH NT seq 3951 nt NT seq  +upstreamnt  +downstreamnt atggcatcatcgcgtcggcaaagcaacggtagatcacctctcgttaatcaacaacggcag attacttccttcttctctaaaaccaactcaccttccccttctcctactatctccaaacag acctctaaactcaaccctaactctaaacctaatcggagcccaagtaaaagcccaagcccc agtccgaccactccgtcccccgttcaatccaagctcaaaaagcccctcctagttattggc caaacgccctccccgactccctcgacgccggccgacaaatcttacggcaaggaggttgtt gataagaggattagggtttactggccgctggataaggcgtggtacgaaggtgtggtgaag tcttttgataaggaatcgggtaagcatttggttcagtatgatgatgcggaggaggaggag ttggatttggggaaggagaagattgagtggattaaagaaagcacgggaaggcttaggcga ttgcggcgagggggttcttcttcggtttttaagaaggtggtgattgatgatgaggatgag ggcgtgacagagaatgtggagccagagagtgatgataatgatgatgattctagtgatgaa gattgggggaagaatgtggagcaggaagtgagtgaggatgccgaggtggaagatatggat ttggaggatggggaagaggaagaagaagaaaatgaggaggaaatgaaaatatcgaaaaga aaaagcagtggaaagactgaagcaaagaaacggaaggcgagtggaggagggaaattggag tctggcaaaaagagtaagacgaatgcaaatgttagtaagcaagagcttaaggtgtctttg gtggaacctgtgaagaaaatagaaagtgataaggcatctaatggttttgataatgctttg gtgggtgatgcatcagaaaggtttggtaagcgtgaagcagagaagttgcacttcctcaca cccaaggagcgtagggatgcaaatagaaaacgtcctgaagatgtaaactacaatccaaag actttatacttgcctcttgatttcttgaagagcctatcaggtggccagaggcaatggtgg gagtttaagtcaaagcatatggacaaagttctatttttcaagatgggtaaattttatgaa ctttttgaaatggatgctcatattggggcaaaagaactggatttgcaatatatgaagggg gaacaacctcattgtggatttccagagaggaacttctctatgaatgtggagaaattagct cgaaagggttatcgagttcttgtagtagagcaaactgaaactcctgaacagctggagctt cgtcggaaagagaaaggtgccaaggataaggttgtcaaacgtgaaatttgtgcggtggtt acaaaaggaacactaactgagggagagatgctctcagcaaatcctgacccttcttacctc atggcagtgactgaatgctgtcaaagttcaacaaaccagaatgaggatcgtatttttggt gtgtgtgccgttgatgttgcaactagcaggattattcttggacagtttggggatgatttt gagtgcagcggattgtgtagtctattggctgagttgaggccagtagaaattataaaaccc actaaactgctcagtcttgaaactgagagggcgatgttgagacatacaagaaatctctta gtgaatgagttggtcccatctgcagaattctgggatgcggggaaaactgtttgtgaagtt aaaaacatctacaagcgtattaatgatcaatcagctgctagatctgttaatcatgtgggt ccgaatgctgctaattcttgtgagggagatgggtcatgctgcctgccagctatcctttcc aatctactgagtgctggtgcggatggcagcctagcactctcagctcttggaggcactctt tattacctaaaacaggcttttctagatgagacattacttagatttgcgaagtttgagtca cttccgtcctctggtttcagtggtattgctcaaaacccctacatgcttcttgatgctgct gccctggagaaccttgagatctttgaaaacagcagaaatggagactcttctgggacactc tatgcacaattgaatcactgcgtgacagcatttgggaaaaggttgctaaaaacatggctt gctagaccattatatcatgtggatttgattaaggaacgccaagatgctgtagcaggccta aagggtgaaaatctatcatatgcacttgaatttcgaaaggcattgtccaggcttcctgac atggagaggttgcttgcacgtatctttgctagcagtaaagctattggaagaaatgcaaat aaagttattttatatgaagatgcagcaaagaagcaactccaggaattcatatcagctcta cgttgttgtgaattgatggttcaagcatgttcttcccttggtgtcattttagaaaatttg gagtctactcagcttcatcatttgttaacagctggtaaaggtcttcccaatatccattca attcttaagcatttcaaggatgcctttgattgggttgatgccaacaattctggacgtata atacctcatgaaggagttgatatggagtatgactctgcatgtgaaagagttaaggagatc gaatctagtttgactaagcacctcaaggaacagcgcaagttacttggagattcatcaatc acctacgtcacagttggaaaagatgtatatctattggaagtgccagaaaacttgcgcgga agtgtccctcgggattatgagttacgttcatccaaaaagggtttcttccggtactggact caatatatcaagaaggtcattggagaactctcacaagctgaatctgaaaaggagatggct ttgaagaacattctccagaggttaatcggacaattctgtgaggatcacaataaatggcgg cagctagtttcaacaacagcagaactggatgtactgatcagtctagcgattgcaagtgat ttttatgaagggccaacatgtcgtcctcttatcttgggctcctcatgttcaaatgaagtg ccatgcctttctgcaaaaagtttaggacatcctattctcagaagtgattctttaggcaac ggtgcatttgtccccaatgacattactattgggggctctggtcatgcaagttttatcctt cttactggccctaatatgggtggaaagtctacacttcttcgccaagtttgcttggctgtg attttggcccaggtaggagccgatgtccctgcagaacatttcaaactatctcctgttgat cgaatctttgtccggatgggtgccaaagatcatattatggcgggacagagtacattttta acagagctttcagaaactgcattaatgctgtcttcagcaactcaacattcacttgtggca ttggatgaacttggacgtggaacatcaacttctgatggacaagccattgcagaatcagtt cttgaacattttgtacacaaggtgcagtgtcgaggaatgttttcaacacactatcaccgt ttggctgtggactatgaaaacaattccaaggtctctctctgccatatggcatgccaagtt ggaaatggagttgcaggtgtggaagaagttacatttctttacaggttgaccactggagcc tgtccaaaaagctatggggtgaatgttgcacgactagctgggcttccggactcagtacta ctgacagctgctgctaagtctagagaatttgagtctgcgtatgggaaacacagaaaggga tctgaagacgacttgccaatgcaaagttgtgcagataagatggtagcttttattcgagaa ttgatcagccttacagcaaatgcaaattgcttaaacacttacgaggatagttgtatcaac tccttgaccgaacttcaacatagggcaaggatacttctgcagcaacattaa

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