Tigriopus californicus (tidepool copepod): 131891072
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Entry
131891072 CDS
T09700
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131891072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131891072
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131891072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
131891072
NCBI-ProteinID:
XP_059096553
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Position
11:complement(8927208..8930823)
Genome browser
AA seq
1054 aa
AA seq
DB search
MSKQASILSFFNRRASSTAQGQGDGVGPPLGSPRGSPHSPKTPVRTPKRPIAPSPVLTDT
TPPTRTPESNTPTRKRIKRGPVPDDQDDENDESEADPDANENRPPQSAPRRKSTGPDPAP
KTSMAGPSSPSPARLGLGRPPGCSSRDEVETVLNPTPAANSSTETYLHTTWDFLNGGRRD
AQGHSPEDPDFDPGTLRVPAQFLAKQTPAQRQWWEMKARHFDTVLFFKMGKFYELFHMDA
LIGVQACGMLLMKKEMAHCGFPESALQRYVDILVGQGYKVARIEQTETPQMMAARVQREG
KKGPDAKAVRREICQIVSSGTRINSLDHDDCLLLLYTPPSMESVGQESGSCSEVGVAVFQ
PSVMKLFIGTLFSVADTAEILTLIQIVRPTEIVSDPSIPQSWKDSLIAFQPLRLRWQTSP
PALEGDYAFLKEQRYGDDLKPFSAEDFMNRHAVLVKETSSKQAFLWMLTTLKESLIDQAV
ISNGDVLPLTDVLMANSKDSHLQFYGNALCNLDILPGKPEQKGLIHVLDRTLTASGKRLL
RQWLAHPLANGQEIKHRQDILKSLDASIVQDCRSDMKGLGDLEKHLARLCLYGFKAKNHP
DNRAILYETKLSSRLAKSLQAILTGFTAYVSILRRLLKIEPNMHDMTQSSLNEVHSHCEK
FTRFLSKVDGDDTFVIPSGFNVFYDEVLQRKDDVTRRSEEFLEEQSRHFGTSLKFWGTGS
NRFQLEVPESLAKKANNRYTLASQKKGFKRYSTSETLALCQEMEELEVELQDMHGDVVTE
MVRQFSSHKFLWQVVIKSVAQVDCFFSLYLFNEDDSESKTLPHILSDAKNPSIQIRQGQH
PILNYVKKGEADGVVIPNTIDLGMEMFILTGPNMGGKSTLMRQTALLVALAQLGVKVPAE
EMSFYPVDKIFSRMGASDNIMEGKSTFLMELLETSTVFQNMTSNSLVLIDELGRGTSTYD
GCAIALATLEFLAGKCRGLFSTHYHEIFRYIDRIPGKISLHYMDFMKENEDVVFLYQLKK
GRCTESHGLNVAKLAGIPEDIIEKASRIAISKVN
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacaggcctcgatcctgagtttctttaatcgccgagcctcgtccaccgctcaa
ggtcaaggtgatggagtcggaccgcccctgggctcacctcgaggctccccccactcgccc
aaaaccccagtgcgcacgcccaagcgccccatagcgccttcacccgtcttgaccgacacc
accccacccacccgaacccccgaatcgaacacacccacccgcaaacgtatcaaacgcggt
cctgttcccgatgaccaggacgacgagaacgacgaatcggaggcggatcccgatgccaac
gagaatcgcccaccccaatctgcgcccaggcgaaaatcgactggcccagacccagcgccc
aagacatcgatggctggcccatccagcccttcgcccgcccgcctcggcctcggtcgcccc
ccgggttgctcgagccgggatgaggtcgagacggtcttgaacccgactcccgctgccaat
tcgtccacggagacgtacttgcataccacttgggactttctcaatggcggacggcgtgac
gctcaagggcattcacccgaggatccggattttgaccccggcactctgcgggttccggcc
caatttttagccaaacaaaccccggctcaaaggcaatggtgggagatgaaagcccgtcac
tttgatacggtgctcttcttcaagatgggcaagttctacgaactgttccacatggacgcc
ctcatcggggtccaagcttgcggtatgctcctcatgaagaaagagatggctcattgcggt
tttcccgaaagcgccttgcaacgctatgtggatattctcgtgggtcaagggtacaaggtg
gcccgcattgaacagaccgaaaccccgcaaatgatggcggctcgagttcaaagggagggc
aagaaaggtccggatgccaaggccgttcggagggaaatctgtcagattgtgtcctcgggc
acgcgaattaactccttggaccatgacgattgtctgttgctgctctacacgcccccgagt
atggaatcggtaggccaagaatccggttcctgttcagaagtaggagtggccgtgtttcag
ccctcggtgatgaagctctttatcggcacgctcttttcggtggctgacacggccgaaatc
ttgaccctgattcagattgtacgtcctacggaaattgtgtcggatccgagcattcctcaa
tcgtggaaggattctttgatcgcatttcagcccttgcggcttcgatggcaaacctcgccc
ccagctttggagggcgactatgcctttctgaaagagcaacgatatggcgatgatttgaag
ccgttttcggccgaagacttcatgaaccgtcatgcagttctggtcaaagaaacgtcttct
aaacaagcgttcttgtggatgctgaccactttaaaggaatcgctcattgatcaagctgtc
atctccaatggcgatgtcctacctctgacggatgtgctgatggccaattccaaagacagt
catttgcaattctacggaaacgctctttgcaatttagatatcttgcccggaaaacctgag
cagaaaggcctaatccacgtgctcgatcgcactttgacggcttcaggtaagagacttcta
cgccaatggttggctcatcctttagcgaatgggcaagagatcaagcaccgccaagacatc
ctcaaatccttggatgcttcgattgttcaggattgtcggtctgatatgaaaggcttaggt
gacttggagaagcatttggctcgtttatgcctctatgggtttaaagccaagaatcatccg
gataatcgcgccatcttgtacgagacaaagctctcgagccgattggccaagtcattacag
gccatcttaaccggcttcacggcctatgtgtccatcttgcggcgattgctcaaaattgaa
ccaaacatgcacgatatgacgcaatcgtcgttgaatgaggtgcacagtcattgcgagaag
ttcacgcgatttctgtccaaagtcgacggcgacgacacattcgtgatcccctccgggttt
aacgtcttttatgacgaagtgcttcagagaaaagacgatgtcactcgacgaagcgaagag
tttctggaagagcaatcccgtcatttcggtacatcactcaagttctggggtacgggtagc
aatcgctttcaattggaggtccccgagagcttggccaaaaaggccaataatcgttacaca
ctcgcctcccaaaagaaaggcttcaagcgatactcaacgtcggaaacgttagcgctatgc
caggaaatggaggaattggaagtggaattgcaagacatgcacggggatgttgtcacggaa
atggtgcgacaattctcgtctcacaagttcctctggcaagtcgtgatcaagtccgtcgct
caagtggattgcttcttcagtctatacctgttcaatgaagacgattccgaaagcaaaacg
cttcctcacatcctgtccgatgccaagaacccaagcattcaaatccgacaaggtcaacat
cccatcctgaattatgtcaaaaagggtgaagccgatggagtggtgatccccaataccatc
gatctggggatggaaatgttcatcctcactggccccaacatgggtggaaaatcaacgttg
atgcgtcaaacggctcttctagtggcattagctcaactgggcgtcaaagttccggcggag
gagatgtctttctatcccgtggacaagatattctcccgaatgggggccagtgacaatatc
atggagggcaagagcacattcctcatggagctattggaaacctccaccgtcttccaaaac
atgacgtcgaattccttagttctcatcgatgaattgggtcgaggaacgtcaacttacgat
gggtgcgccatcgccttggccaccctcgagttcttggctggcaaatgtcgaggtctcttc
tccacacattaccacgagatttttcgctacattgatcgcattccaggcaagatctcgtta
cattatatggattttatgaaagaaaatgaagatgtggtatttttgtatcagttaaagaaa
ggtaggtgtaccgaatctcatgggttgaatgtggccaaattggccggcattccggaagac
attattgaaaaggcctctcggatcgcgatttccaaggtcaattag
DBGET
integrated database retrieval system
