Tetrahymena thermophila: TTHERM_00538940 Help Entry TTHERM_00538940   CDS       T01020                                  Name (RefSeq) DNA-directed RNA polymerase   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism tet  Tetrahymena thermophila Pathway tet03020   RNA polymerase tet03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:tet00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     TTHERM_00538940   09124 Replication and repair    03420 Nucleotide excision repair     TTHERM_00538940  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tet03021]     TTHERM_00538940    03400 DNA repair and recombination proteins [BR:tet03400]     TTHERM_00538940 Enzymes [BR:tet01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      TTHERM_00538940 Transcription machinery [BR:tet03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      TTHERM_00538940 DNA repair and recombination proteins [BR:tet03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       TTHERM_00538940 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_6 RNA_pol_Rpb1_4 Motif Other DBs NCBI-GeneID:  7839138 NCBI-ProteinID:  XP_001007918 TGD:  TTHERM_00538940 UniProt:  I7MHL5 LinkDB All DBs AA seq 1749 aa AA seqDB search MKQSGQKYAYSQMETAKVNGVHFSILSEKEIESWCVCEIKNFENGNKEDEGFINDKRLGT TSKDACKTCNQKNECPGHFGYINLRRPIYHINFINTVKQILLCVCHKCGAVREPPIKRNE SGKPASKTEFAKLEKYLEVMNISQPKRRLNELYKILGKQSKCQNDKCNSYLFVKVSVVKF LNLKVAEKQSDKDAIEYDLSAEQALEILKKIRYADSKKLLAYKGQRKHDDDFLQPTNLIL TKLLVPPPQVRPSIEMSSNMTCQDELTKCYEEVLKLNAQIKDNSDNRKLVEQIQSVVARM MDNDKPRLEALKIKSKVVKSFSQRLKGKEGRFRQNLMGKRVDFSARSVISPDANLWLDEL GVPRSIADSLTVPEIVNQQNINRIRELWKQGKIKSIMKPNREKQIYEAYDAIICSGDRQA DDNFDMHVNDGVIIERALQNGDYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPY NADFDGDEMNMHVPQSYETRVELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRD KFLTREQVMNLVMWIDNWEGDLPMPAILKPEPLWTGKQIMSLVIPEQMTMTRFKGDKEDD KWFHKQDESIYIYKGELIQGYMNKAIVGDGPGGLVHLIWLDIGHEETKNFMTRCQRVVNN WLIMFGHTISCADIVPSEKCSEEIEKIRKKAFEKYDKIELDFQDAAYIDQNNMHKAGKKI FDSFEVQVNSILNELRQESEKKAEETIKFKYNQFNKMVWSGSKGKATNLAQVMGLVGQQN IEGARIRNGFSRRTLPHFCKDDNGIIARGFVVNNFYIGLKPYEFFFHTMGGREGLSDTAV KTSRTGYIQRKLVKALEDVIVRYDGTVRDSQGMIIQTCYGEDSLAGEFIETQKIGEVDYK EEDFQKEYRFVKANKSDDWLFQYTKLDQMENQISKEISRDVLIAIKEEFMRMINERNEGE DPKFILEQEYEELIEARNLFRKNFYFYAQEGKLDINLPVNIGRMIESAKIEMSQKNKTYT RDQCKTNPIQVYKSLLELFKNLDDYAVKRGMEYESLALFKAHIRLHLGSKKIVLRHKLSM EVFDKLTKEIFDKFKKAISHPGETIGAISAQSVGEPTTQMTLNTFHFAGVSDRNVTLGVP RLQEILDASKNVKTPEMTVFFENGLRKKIFRKDMMSNYDAESFKREYDEIVSQERQEILR LKQEIEYQTISYYINQTRIVYKSKDDEDFQQQDNIFDDDNISDDLEDPIVLIIYFDTQKT TIDTFELLNAKIRKIADDSKKWGNLIVEKKQFEKGQIHVKFDSTQLGQGQQNPDSQMNAY SSLLLFESEFKDAYIGGIQKIQKVYPTQKKEFRPWVENECICEAPKPGAAFFTERKPQEH IFNTSGSNLKEVLKVDKVDATRTYSNDIQEIITILGIEAGRRSIVNQIRVVIEPYGIYIN YRHLAILAEWMTVRGRLTPINRNGINRIPGLSCLRKSSFEETVDILNTAAIFFEKDDLKG VTENIIFGQNCDIGTGCFDLLVDLNKVGEFKTKRQVEQTLEMEDYSENESSRYENTPSHF QTPGPGLVSAYPNSIRTVQHAGSFTPTTPYLNSPGYNMSTPISYSNTYNQTRSSQYSPQT GNNSPFVPSPNYSPPSHTPAGSTSPANASPYASSPQYKSSSLSGAHSPSYTSPSQVRYNS PSYQNPHASSSSPLDRSKSAYMGSQQSPQYMSSPHYEQRTTPMTRNIKSETSYNPTEERE SEESDSDQD NT seq 5250 nt NT seq  +upstreamnt  +downstreamnt atgaaatagtctggacaaaagtatgcttactcctagatggagacagccaaagttaatggc gtccatttctctattctctctgaaaaggaaatagaaagctggtgcgtttgtgaaattaaa aattttgaaaatggtaataaagaagatgaaggctttataaacgataaaagattaggtact acctctaaggatgcatgcaaaacttgtaattaaaagaatgaatgtcctggtcattttggt tacatcaatcttagaaggcctatatatcatatcaatttcataaacacagtcaagcaaatt cttctctgcgtctgtcacaaatgtggtgctgtaagagagccccctattaagagaaatgag agtggtaaacctgcaagtaaaacagaatttgctaaacttgaaaagtatttagaagttatg aatatttcttagcctaagagaagacttaatgaattgtataaaatccttggaaaataatcc aaatgccaaaacgataagtgcaactcatatttatttgttaaagtcagtgtagtgaagttc ttaaatcttaaagtagctgaaaagtaaagtgataaggatgctattgagtatgatctgagt gcagaataagcattagaaattttaaagaagattagatatgctgactccaaaaagttatta gcttacaaaggataaagaaaacatgatgacgatttcttgtagccaactaatcttatctta acaaagttgcttgtacctccaccctaagttcgcccttctattgaaatgtcatctaatatg acctgtcaagatgaactcactaaatgctatgaagaagtattgaagctaaatgcataaatt aaagataattctgataacagaaagctggttgagtaaatctagagtgttgttgccagaatg atggataacgataaaccaagattagaagcacttaaaattaaatcaaaggttgttaaaagt ttttcttagagattaaaaggaaaagaaggtagatttagataaaatttaatgggtaaaaga gtagatttttctgcaagatctgttatttccccagatgcaaatttatggttggatgaatta ggtgttcctagaagtattgctgacagtttgactgttcctgaaatagttaactaacaaaat ataaacagaattcgtgaattatggaagtaaggcaaaattaaaagtattatgaaacctaat cgtgaaaaatagatttatgaagcttacgatgctattatttgcagtggtgatagataagct gatgataattttgacatgcacgttaatgatggtgttattattgaaagagccttatagaat ggtgattatgtgctatttaaccgttagccctctctccataaaatgagtatgatgggacat agagttagaattcttccttacagtactttccgtcttaacttatcagtcacaaccccttat aatgcagattttgacggtgatgaaatgaatatgcatgtgccataatcttatgaaactcgt gttgaacttggttatatttgccatgttcctagataaattgtcactcccaaggctaacaaa ccagttatgggtttggtgcaagattcattattaggtgtagctatgtttactttaagagat aagtttttaacaagagaataagttatgaatttagttatgtggattgacaattgggaagga gacctacccatgcctgctattcttaaacctgaacctttatggactggtaaataaattatg tctttagtcattcctgaataaatgactatgaccagattcaaaggtgacaaggaagatgac aagtggttccataaataggatgaatctatttacatctacaaaggtgaactaatttaaggc tatatgaataaggctattgttggtgatggtcctggtggtttagtccatttgatttggtta gatattggtcatgaagaaactaaaaatttcatgactagatgttagagggtagttaataac tggcttattatgtttggtcacacaatcagttgtgctgatatcgtgcctagtgaaaaatgt tcagaagaaattgaaaaaattagaaagaaagcctttgaaaaatatgataaaattgaatta gatttctaagatgcagcttatattgattaaaataatatgcacaaggctggtaagaagatt tttgattctttcgaagttcaagttaactccatcttgaatgaactcagacaagaatccgaa aagaaagcagaagaaacaattaaattcaagtacaactaattcaacaagatggtgtggtca ggttcaaaaggtaaagctactaacttagcctaagtcatgggtcttgtaggttaacaaaat attgaaggtgctagaatcaggaatggtttttcaagaagaactcttcctcatttctgcaaa gatgataatggtattattgcaagaggtttcgtcgttaacaatttctacataggtttaaag ccctacgaattcttcttccacacaatgggtggtagagaaggtctttctgatactgcagtc aagacaagtagaactggttatatttaaagaaagcttgtcaaggctcttgaagatgtcatc gtacgttatgatggtacagttagagatagttagggtatgattatttaaacatgctatggt gaagattcattggcaggtgaattcatcgaaacctaaaagatcggagaagttgattataag gaagaagatttccaaaaggaatacagatttgtcaaagcaaataaaagcgacgactggtta ttccaatatacaaaattggactagatggaaaatcaaattagcaaagaaatcagtagagat gttttaattgcaatcaaggaagaatttatgcgtatgattaacgaaagaaacgaaggagaa gatcctaaatttatcttagaataagagtacgaagaactcatcgaagctagaaacctgttt agaaagaatttctacttctacgcataagaaggcaaacttgatattaacttgccagtcaac attggtagaatgattgaatctgctaaaattgaaatgtcttaaaagaataaaacttatact agagattaatgtaagactaatcctatttaagtttataagagtctcttagaattatttaag aatcttgatgactatgcagttaaaagaggtatggagtatgaatctttggctttgttcaag gctcatatccgtctccatcttggttccaaaaagatagtattaaggcataagctttcaatg gaagtatttgataaactcacaaaggaaatttttgataaatttaaaaaagccatttctcac ccaggtgaaaccattggtgctatttcagcttaatctgtaggtgaacccacaacataaatg actttgaatactttccactttgcaggtgtgtcagatcgtaacgttacgcttggtgtccct cgtctttaggaaatattagatgcttctaaaaatgtaaagacaccagaaatgactgtcttc tttgaaaatggtttaagaaaaaaaattttcaggaaagatatgatgagcaactatgatgca gaaagctttaagagagaatatgacgaaattgtttcgtaggaaagataggaaattttaaga cttaaacaagagattgaatactaaactatttcttactacattaatcaaaccagaattgtt tataaatctaaagatgatgaagacttttaataacaagataacattttcgatgatgataat atttctgatgatctcgaagatcctattgtcctcattatttattttgatacttaaaagaca acaattgatacttttgaactcttgaatgcaaaaattagaaaaattgctgatgactctaaa aagtggggtaacctcatagttgaaaagaaataatttgaaaaaggacaaattcatgttaaa tttgactctacccaattaggttaaggataataaaatccagattcttaaatgaacgcttat tcttctctccttctctttgaatccgaattcaaggatgcatacataggaggtatttagaaa atccaaaaagtttatcctacccaaaagaaggaattcagaccttgggttgaaaatgaatgt atatgtgaagcccccaaaccaggtgcagctttcttcacagagagaaaaccttaagaacat attttcaatacttctggttcaaatctcaaagaagtattgaaggttgataaagtagatgct actagaacttattctaacgatatctaagaaatcattaccattcttggtatcgaagcaggt agaagatctattgttaattaaattagagtcgtcattgaaccttatggtatttacatcaac tatcgtcatttagctattttggctgagtggatgactgtaagaggtcgtttgactcctatt aatagaaacggtatcaatcgtattcctggtttatcttgcctcagaaaatcttcctttgaa gagacagtagatattctcaacacagctgccattttctttgaaaaggatgatttgaaaggt gttactgaaaatattatctttggtcaaaattgtgatattggtactggttgcttcgactta ttagtcgacttgaataaggttggtgaatttaaaacaaagagataggttgaatagacatta gagatggaagattattcagaaaacgaatcctctcgttacgaaaatactccttctcatttc caaactcctggtcccggtctcgtttctgcttatcctaattctattagaacagtataacat gctggatctttcactccaaccactccctacctaaactctcctggatacaatatgtcaact cctatctcttactctaacacctataaccaaaccagaagttcttaatatagtcctcagaca ggcaataattctccatttgttccttctccaaactactcacctccaagccacactccagct ggttcaacaagccctgcaaacgctagtccttatgcaagctcaccttaatataaaagcagt agtcttagtggagctcactctccctcttacacttcaccttcacaagtgagatataattcc ccaagttatcaaaatcctcatgctagttcatctagtccacttgatagatctaagtcagct tatatgggatcctaacaatcaccttaatacatgagttctcctcactatgaatagagaaca actcctatgactagaaatattaaaagcgaaacttcttacaatccaactgaagaaagggaa agtgaagaaagtgattctgatcaagattga

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