Tachysurus fulvidraco (yellow catfish): 113647715
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Entry
113647715 CDS
T08119
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113647715 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113647715 (clp1)
Enzymes [BR:
tfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
113647715 (clp1)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113647715 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_16
MMR_HSR1
ATP_bind_1
AAA_22
TniB
CbiA
AAA_18
Urease_beta
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113647715
NCBI-ProteinID:
XP_027010389
LinkDB
All DBs
Position
17:4913726..4917857
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AA seq
445 aa
AA seq
DB search
MFGMSTEAPEKAADEGQSSGGAAGARFDLEKETELRFEVEAGERVQLELLSGLAEVFGSE
LNRNKKYTFGPGSKIAVFTWQGCSLSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAE
RDNERGPRVMLVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALYI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRETRDDKIREYFYGFRGASFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSCVDDETEGGESRSRGILESPVCGFIVVTAVDTQAQVMT
VLAPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtatgagcactgaggcgcctgagaaagctgctgatgaaggccagagctctggg
ggagccgccggagcgcggtttgacttggagaaggagactgagctcaggtttgaggtcgag
gcaggagagcgagtgcagctcgaactgctgtccggtctggccgaggtgttcggatcagaa
ctgaaccggaacaagaagtacacattcggacctggctcgaaaatcgcagtgtttacgtgg
cagggatgcagtctgtctctaagcggcaagaccgaggtggcttatgtctctaaagacacc
cctatgctgttgtatcttaacacacatgctgcgttggagcaaatgagacggcaggctgag
agagacaacgagagaggcccaagggtcatgttggtggggccgacggatgtgggaaagtcc
acagtgtgccgtctactactgaactatgcagtgaggctgggcaggaggcccacgttagtg
gagctggatgtcggccaaagcagtgtgtctgttccagggacaatgtcagcactgtacatt
gagcgtccagcagatgtcgaggaaggcttctctgtccaggctcctctagtcttccacttc
ggttccacaacaccagggaccaatatcaaactctataacaagctgacatcgtgtctggca
gaggtgttctcacagcgctgtgaggtgaaccggaaggccagtgttggaggctgcatcatc
aacacgtgcggctgggtgaaagggtcaggataccaggcgctggtccactgcgcttcagca
ttccaggtggatgtggtgctagttcttgatcaggaacgcctttacaatgagcttaaaagg
gatctgccacattttgtccgtgtcgtactgctacccaagtccggcggtgtcgtagaacgc
tctaaagactgcagacgggagacccgggacgacaaaatccgtgagtatttctacggcttc
cgtggagcctcgttctacccacatgcttttgatgtgcgcttctcggatgtgcgcatctac
aaaattggtgcaccttccattccggactcgtgtttgccactgggcatgtcacaggacgac
acacagctgaagctggttcctgtgagcccggggcgtgacctgacgcatcacgtgctgagt
gttagttgcgtggatgatgaaacagagggaggagagagccggagcagggggattttagaa
agtccggtttgtgggttcattgtggttacagctgtggacactcaggctcaggtgatgacc
gtacttgctccagcaccccgacctctgcctcgccacacactcctcatcatggacattcgc
ttcatagacctgaagtaa
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