Tachysurus fulvidraco (yellow catfish): 113655046
Help
Entry
113655046 CDS
T08119
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03020
RNA polymerase
tfd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113655046 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
113655046 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113655046 (polr2a)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113655046 (polr2a)
Enzymes [BR:
tfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113655046 (polr2a)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113655046 (polr2a)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113655046 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
113655046
NCBI-ProteinID:
XP_027021122
LinkDB
All DBs
Position
8:complement(3266483..3280720)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSSDSACPLRLIRRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPFKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSALEKEFDKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaggagggttcag
ttcggcgtcctcagccctgatgagcttaaacggatgtctgtcaccgaagggggcatcaag
taccccgagaccacagagggaggacgccccaaactgggaggtctcatggaccctcggcag
ggcgtcatcgagaggtccgggagatgccagacgtgtgcaggtaacatgacagaatgtccg
ggtcacttcggtcacatcgagctggccaagcctgtctttcacgttggcttcatcacaaag
atcatgaaagtcctccgctgtgtgtgtttcttttgctccaagctgctggtcgatgcgaac
aacccaaaaatcaaagacatcttgggcaagtcgaaaggtcagccgcgcaagcgcttgatg
cacgtgtacgacttgtgcaaaggtaaaaacatctgcgagggtggcgaggagatggacaac
aagttcggagtggagcagcaggagaacgacgaggacctcacgaaagaaaagggtcacgga
ggatgcggacgctaccagcctcgtatccggcgctcaggcctggaactgtatgccgagtgg
aagcacgtgaacgaagactctcaggagaagaagattcttctcagccccgaacgtgtgcac
gagatctttaaacgcatctcggacgaggaagatctcatcctgggtatggatcccaagttt
gctcggcccgagtggatgatcgtcaccgtgttgccggtgccgcctctcgccgtcagaccg
gctgtggtcatgcagggatcggccaggaaccaggacgatttgactcacaagttagccgac
atcgtgaaaatcaacaaccagctgcgacggaacgagcagagcggcgccgcagcacacgtc
atagcagaagacgtcaagctcctgcagttccacgtagccaccatggtggacaacgagctg
cctggtctgcctcgagccatgcagaaatccggtcgtccgctcaaatcaatcaaacagcgg
ctgaaggggaaagaaggcagagttcgtggaaacctgatggggaagcgtgtggacttctcc
gccagaacagtcatcacgcctgatcccaacttacagatcgaccaggtgggcgtgccccgc
tccatcgccgctaacatgaccttccctgagatcgtcacgccctttaacatcgacagactc
caggaactcgtgaggagaggaaacagtcagtatcctggagccaaatacatcatccgtgat
aacggagaccgaattgacctccggttccacccaaaaccgagcgaccttcaccttcagatc
ggctataaggtggagaggcacatgtgtgacggcgacatagtcatctttaacagacagccc
accttgcacaaaatgtctatgatgggtcacagagttcgaatcctgccttggtctacgttt
cgactcaacctcagcgtaacgactccatacaatgccgacttcgacggagacgagatgaac
cttcacctgccccagtcactcgagacccgtgccgagatccaggagctggcgatggtgcca
cgtatgatcgtcacaccccagtccaacagaccagtcatgggtatcgtgcaggacacgctt
acggccgtgcgcaagttcaccaagcgagacgtcttcttagagaggggcgaagtgatgaac
ctgctgatgttcctgtcctcctgggacggcaaagtgcctcagcctgcgatcctgaagcca
cgcccactgtggaccggcaaacagatcttcagcttgatcattccaggtcacatcaacgtg
atccgtacgcacagcacgcatccggacgacgaagacagcggcccgtttaagcacatctct
cccggagacacaaaggtgattgtggaaaacggagaactgatcatgggaatcctgtgtaag
aagtccctgggtacatctgccggttctctcgttcacatttcctacctggagatgggtcac
gacatcactcggcttttttactccaacatccagactgtcgtcaacaactggctgctcatc
gaaggtcactctatcggtatcggtgattccatcgccgacgcaaagacgtatcttgacatt
cagaacaccatcaagaaggctaagcaggacgtgatagaggtcatcgagaaagctcacaac
aacgaactggagcccactccgggtaacactctgagacagaccttcgagaaccaggtcaac
cgtatcctgaacgacgctcgagacaagaccggatcttctgcccagaagtcactgtctgag
tacaacaacttcaaatccatggtggtggctggatccaagggctccaaaattaatatctca
caggttattgctgtggtggggcagcagaacgttgagggtaagcgaatcccgttcggcttc
aagcaccggactcttcctcactttatcaaggatgactacggtcccgagagtagagggttc
gtggaaaactcgtaccttgccggtctgacgcctacggagttcttcttccacgccatggga
ggcagagagggtctgatcgatacggctgtgaaaacggccgagacaggttatatccagcgt
cgtctgatcaagtctatggagtctgttatggtgaaatacgacgccacggtgaggaactcc
attaatcaggtggtacagctgagatacggcgaggacggcttggccggagaggccgtggag
tttcaaaacatggctacgcttaaaccatcccacaaagcttttgagaagaagttcaagttc
gagtacacgaacgagcgagcgctgcggcgcacgctgcaggaggacgtgttgaaggacgtg
atgaccaacgcgcacgtccagagcgctctggagaaggagttcgacaaaatgaaggaggac
cgagagatcttgagagctatttttcccactggagacagcaaggtggtgctgccgtgcaat
ctggctcgaatgatctggaacgcgcaaaagattttccgcatcaacccgagaactccgacg
gatctcaaccctttaagagtggtggagggtgtgcaagaactgagtaagaagctagtgatc
gtgaacggcgacgatccgctaagcaagcaggcccagcagaacgccacgctgctgtttaac
atccacctccgctccaccctctgctccaaacgcatgaccgaagagtttcgtctcagctcc
gaggccttcgagtggctcctcggtgagatcgagaccaagttcaaccagtcgatcgttcac
ccgggtgagatggtgggtgctctggctgctcagtctctgggtgaacctgccactcagatg
accctgaacaccttccattacgccggcgtgtcggccaagaacgtcaccctgggtgtgcct
cgactcaaggagctgatcaacatctccaaacgtcccaagactccgtccctgaccgtgttc
ctgctgggccaggctgcccgcgacgcagagcgcgccaaagacatcctgtgtcgcctggag
cacacgaccctccgcaaggtcacggcgaacactgctatctactatgacccaaaccctcag
agcacggtagttgcagaggatcaggagtgggtgaacgtttactacgagatgcccgacttc
gacgtgactcgcatctctccctggctcctccgcatcgagctggaccgcaagcacatgacg
gaccgcaagctctccatggagcagatcgcagagaagattaatgcaggttttggcgacgac
ctaaactgcatcttcaatgacgataacgccgagaagctggtgctgcgaatccgtatcatg
aacagcgacgagaacaagttccaggaggacgaggaggtggtggataagatggacgacgac
gtgttcctgcggtgcatcgagtccaacatgctaacggacatgaccttacagggcatcgaa
caaatcagcaaggtgtacatgcatcttcctcaaaccgagaacaagaaaaagaccataatc
acagaggagggagagtttaaagctctacaggaatggattctggagacagacggcgtcagt
ctcatgagagtcctcagcgagaaggacgtcgacccagtcaggaccacctcgaacgatatt
gtggagatcttcactgtgctcggtatcgaggcggtacgcaaggctctggagagagagttg
taccacgtcatctccttcgacggttcctacgtgaactaccgccacctcgccctcctgtgc
gacaccatgacctgcagaggtcacctgatggccatcacccgtcacggcatcaacagacag
gacaccgggccgctcatgaagtgctctttcgaagagacggtggacgtcctgatggaggcg
tcgtcccacggagaatgcgatcccatgaagggcgtgtccgaaaacatcatgctcggacag
ctggctcctgcaggcaccggctgcttcgacctgctgctggatgctgagaaatgcaaatat
ggcatggagatccccactaacattcccggtatcagcgtggctggaccaaccggaatgttc
tttggttccgcccccagccctatgagtggtatgtctccggccatgacgccctggaacacg
ggggccaccccggcttatggtgcatggtctcccagcgtgggaagtggaatgactcctgga
ggtgcaggtttttcaccaagtgctgcctccgacgccagcggtttctctccgggttactcg
cctgcgtggtctcctacacccggctcccctggatctcctggtccagccagtccttacatt
ccctctccaggtggcgccatgtctccaaattattcccctacgtcaccagcgtatgagcca
cgctcccctggaggctataccccacagagccctggctattcccccacgtccccgtcatat
tctcccacttctccttcctactctcccaccagccctaactatagccctacgtctccatct
tattccccaacgtctccatcttactctcccacatctccatcttactccccaacctcacca
agctattcacccacatcaccctcttactctccaacgtctccttcttattcccccacttcc
ccttcgtactctccgacgtccccgtcatactctccgacttcgccttcttattctccgacg
tctcccagctattctccgacgtctcccagctattctcccacctccccctcgtactcgccc
acctccccctcgtactcacccacctctccttcgtattccccaacgtcgccctcgtattcc
ccgacatctccaagttacagcccgacctcgcccaattacacgcccacttcgcccagctac
tcacccacctctccatcttacagccccacttcaccttcatattcgcccacgtctccgaat
tacacacccacaagccccaattattctccaacgtctccatcttactcccctacctctcca
tcttactctccatccagcccacggtacacaccgcagtctcctacgtacaccccgagctcg
ccctcgtacagcccgagctccccatcttactctcccacctctcccaaatacacccccacc
tctccatcatacagccccagctctccggaatacaccccgacgtcacccaaatactcgccc
acttcgcccaagtactcgcccacgtctcccaaatacagccccacgtctccaacttattct
cccactacgcccaaatacagccctacttctccgacgtactccccaacgtctcctacctac
accccgaccagtcccaagtactctcccacttctcctacctactccccgacgtctccaaaa
tactcaccaacttcaccgacatactctcctactagtcccaaaggttcgacttacagcccc
acttcgccggggtacagtccgacgtctccgacctacagtccagccatcagccctgatgac
agcgacgaggaaaacaactga
DBGET
integrated database retrieval system
