Takifugu flavidus (sansaifugu): 130533598
Help
Entry
130533598 CDS
T09160
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130533598 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130533598 (msh6)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130533598 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
130533598
NCBI-ProteinID:
XP_056903127
LinkDB
All DBs
Position
11:12344453..12349928
Genome browser
AA seq
1373 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPSPSPAEADLPSSVANSNSSPKEQAKETQHQKKAKTGG
LAQKNNPKPVKLGFNKLFGDKAPATKQTSQCPFNAGALVWAKLEGHPWWPCMVVPQPLSG
QQMRGRGRDQRIHVHFFDEPPTRGWVSTKYVREYRGSDSSDAKPGGLFFCGKPVIQQAMK
LADEVMSDSPDERLTMPLCVDPSDEEGEEEMEVDKSTISEEEFSEEEQEPENEKSIKGSR
RSSRASAIKGNKSKRRRIIEASDSDESDDEFKPEQAASSSEDEEEGAAVSSDEEETAHET
EEDSPVKPTKRKRPAGKPAPTKAKIPLTPSNPPKRAPAAVSADTKSRLSAFSAPESFESQ
ASGSGVEGEATVWDHEKLEWLQDGRRKDGGRRRQGCEDYDPSTLYVPEDFLNRITPGMRR
WWQLKSTMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDG
LVQKGYKVARVEQTETPEMMEARCKAMAKPTKFDRVVRREVCRIITRGTQTYSVLDGAPS
ESQSRFLLSLKEKAEEESSGRSRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAHHSP
AEVLFEKGNPSVETRKILKASLSSALQEGLSAGTQFWDAQKTLKTLSEEDYFREGADKGQ
AGGNNSPPPLLKHMTSESDALGLTPKDGYDLALSALGGCIFYLKKCLVDQELLSMANFEE
YVPVDVEMEKAAGPASFFAQTRQRMVVDGVTLANLEIFQNGSGGSEGTLLERLDTCCTLF
GKRLLKQWLCAPLCNPLSIKDRLDAVEDLMGLQAQAGEVSDLLKKLPDLERLLSKIHGIG
TPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISVLASVSGDCQSTLLRQ
VVSLKGEGGGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPEYDQALAGIKTCEGE
LNDYLDRQKKRLGCKNMAYWGTGRNRYQMEVPDSVSDRNIPREYEVKSTKKGWKRYVTRE
TERLFSELQGFEEKRDSALKDCMRRLFYNFDQNYKDWKTAVECMAVLDVLLAFSRYSQGG
DGPMARPEAVLPDSDRAPFLELSGSRHPCVTKTFFGDDFIPNDIFIGCLDSREEEGDGDA
TCVLVTGPNMGGKSTLMRQCGLVVILAQLGCFVPAERLRFTPVDRVFTRLGASDRIMSGE
STFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVNELAERIRCRTLFST
HYHSLVEDYAKNPAVRLGHMACMVENECEDPSQETITFLYKFVSGACPKSYGFNAARLAN
LPEEVIQCGHDKAREFERSTGSLRLFRKICQFVEDETLDNAYFASLIQMLHNL
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctccctcttcaattttttcaccaagtctccaccgccggtatcgaag
ccgaagccgagtccttcgcctgccgaagcagatttgccttcttccgtagcgaattccaac
tcgtctccaaaagagcaagctaaagagacgcagcaccagaagaaagcaaagaccggcggc
cttgcacagaagaacaaccccaaacccgtaaaactcggattcaacaagctgtttggtgac
aaggctccagcgacgaaacaaacctcccagtgcccatttaacgctggcgccctcgtgtgg
gcaaaactggaaggtcacccgtggtggccgtgcatggtggtgccccagcctctgagtggg
cagcagatgaggggccgaggacgagaccaacgcatacatgtccatttcttcgatgaacca
cctactaggggatgggtcagcaccaaatatgtcagagagtaccgagggtctgacagcagc
gacgctaaaccaggaggccttttcttttgtgggaaacctgtaatccaacaggcaatgaag
cttgccgacgaggtgatgtctgacagccccgacgaaaggttgacgatgcctctttgtgtg
gatccgtctgatgaagagggtgaagaagaaatggaggtcgacaagtcaaccattagtgag
gaagagttcagtgaggaagagcaggaacctgagaacgagaagtcgatcaaaggcagtcgc
cgttcgtcccgtgcttcggcaattaagggcaacaagtccaagaggcgccgcataatcgaa
gcctcggacagcgacgagtccgacgacgaattcaaaccggagcaagctgcgtccagcagt
gaggatgaggaggaaggagcggcagtcagcagtgacgaagaggaaacggcccatgagacg
gaagaggacagccccgtaaagcccacgaagcgcaagcgaccagcgggcaaaccggcgccc
acgaaagccaagatcccgctaactccctccaatccgcccaaacgagctccggcggcggtt
tcggcggacacaaagtctcgtttgtcagcgttctctgcgcccgagagtttcgagagccag
gccagcggatcgggcgtggagggagaagccacggtttgggaccacgagaagctggagtgg
ctgcaggacggcaggagaaaagacggcgggaggcgtcggcagggctgcgaggactacgac
ccctccaccctgtacgtgccagaagacttcctgaacaggatcaccccggggatgcgccgc
tggtggcagctgaagtccacgatgttcgacaccgtcatcttctacaaggtcggcaagttc
tacgagctctaccacatggatgctgtgattggcgtcaatgagctggggctgaccttcatg
aagggcacgtgggctcactcgggcttcccggagatcggcttcggccgtttctccgacggg
ctcgtccagaagggctacaaggtggctcgggtggagcaaacggagaccccggagatgatg
gaggcgcgctgcaaggccatggccaagcccacgaagttcgaccgcgtggtcaggagggag
gtgtgcaggatcatcacccgcggcacccagacctacagcgtgttggacggcgccccctcc
gagtcccagagcaggttcctgctcagcctgaaggagaaggcggaggaggaaagctccggg
cggagccgcacctacggcgtctgcttcgtggacacctctgtgggttacttccacgtaggc
cagtttccggacgaccgccactgctcgcgcctgcgcaccctgatcgcccaccactcgccc
gccgaagtgcttttcgagaaggggaacccgtcagtggaaacgcgcaaaatactgaaggct
tctctgtcctctgctctccaggagggactcagcgctgggacgcagttctgggacgctcag
aagaccctcaaaaccctctctgaagaggattacttcagagagggtgctgataaaggtcag
gcagggggcaacaacagtcccccgcctctcctgaagcacatgacctctgagagcgatgca
ctgggcctcacgcctaaagacggctacgacctggcgctgtcggcactgggcgggtgcatc
ttctacctgaagaagtgtctggtggaccaggagctactgtccatggccaactttgaagaa
tacgtgccagtggacgtggagatggagaaagccgccggaccggccagtttcttcgcccag
actcgtcagaggatggtcgtcgatggcgtgactctcgctaatttggaaatctttcagaac
ggctcggggggaagcgaagggactttgcttgagcgcttggacacctgctgcaccctgttt
ggaaagagactgttgaagcagtggctctgcgctcccctgtgcaacccgttgtctattaaa
gaccggctggacgcggtggaagacctgatgggcctccaggcccaggccggtgaggtttca
gacttgctaaagaagcttccagatttagagcgtctgctgagcaagatccacggcatcggc
acccctctgaagggccaggaccaccccgacagcagagcggttctctacgaggaggtcacc
tacagcaagcgcaagatcgcggacttcctgtcagcgctggagggcttcaaaacgatgcag
gagatcatctctgttctggcttctgtctcgggggactgccagtccacgctgctccggcag
gtcgtcagtctgaaaggtgaaggaggcgggctctttccggacctttccgccgaactcaga
cgctgggaaacggccttcgaccaccagaaagcacgcaccacgggcgtcatcaccccgaaa
gctggcttcgatcccgagtacgatcaggccctggctggtatcaagacctgcgaaggagag
ctcaacgattacttggacaggcagaagaagaggcttggttgtaagaacatggcctactgg
gggacggggcggaaccgctaccaaatggaggtgcccgacagcgtctcggacaggaacatt
ccccgggagtacgaggtgaagtccaccaagaagggctggaagcgttacgtaaccagggag
acggagcggctgttctctgagctgcaggggttcgaggagaagagagactccgcgctgaaa
gactgcatgaggaggctgttctacaactttgaccagaactacaaggactggaagactgct
gtggagtgcatggcagtgctggacgtgttgctggcgttctcacgctacagccagggcgga
gacggtccgatggccagaccagaggcggtgctgcccgacagtgaccgggcacccttcttg
gagctgtccgggtcccgccatccctgcgtcaccaagacgtttttcggcgacgacttcatc
cctaatgacatattcatcggctgcctggacagcagggaagaggagggagacggcgacgcc
acctgcgtcctcgtcacaggaccgaacatgggcgggaagtccactctgatgagacagtgc
ggcctggtggtcatcctggcccagctgggctgttttgttcccgctgagaggctgcgcttc
acgccggtcgacagggtcttcacccgcctgggcgcctccgatcgcatcatgtccggggag
agtactttctttgtggagctcagcgagactgcgagcatcctgcaccacgccaccaagcac
tcccttgtgctcttggacgaattgggaaggggcacggccacatatgacggcaccgccatc
gccagcgccgtggtgaacgagctcgccgagaggatccgctgccgcaccctcttctccacg
cactaccactccctggtggaggactacgccaaaaaccccgccgtgaggttgggccacatg
gcttgtatggtggagaatgaatgcgaggatccgagtcaggagacgataacgttcctctac
aaattcgtgtccggcgcctgtccaaagagctacggcttcaacgccgcccgactggccaac
ctgccggaagaggtgattcagtgcggccacgacaaggccagagagtttgagcggagcacc
ggcagcctccgactgttcaggaagatttgccagtttgtcgaagacgagacgctggacaac
gcctacttcgcctccctcatccagatgcttcacaacctgtag
DBGET
integrated database retrieval system
