Takifugu flavidus (sansaifugu): 130534972
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Entry
130534972 CDS
T09160
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03440
Homologous recombination
tfs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130534972 (brip1)
03460 Fanconi anemia pathway
130534972 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130534972 (brip1)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130534972 (brip1)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
130534972 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
130534972 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
MetOD1
Motif
Other DBs
NCBI-GeneID:
130534972
NCBI-ProteinID:
XP_056905680
LinkDB
All DBs
Position
12:complement(14620008..14679201)
Genome browser
AA seq
1498 aa
AA seq
DB search
MPASPLEYTIGGVKIQFPRKAYPSQLAMMNSIIRGLNTGQHCLLESPTGSGKSLALLCST
LGWQQAQYVKLQEGRNPVGEKGWTDKSFGDCKKLDGTNSSCQCVCHSRANVSASATAADT
PAVVDLTVSPCKESTLPPPAAAAGQRPSSEGTQAKKPSLASRLSQKFQVFRKAAPEEDDD
FQPDRKRLRTPEQKSCKRQRLEQGVIFIDDDQEPENVSPGWTKSQKAGMASPCCATGPCT
QCSCASKDGAKDQNSNRRVPKIFFGTRTHKQITQVAHELRRTVYSKVPMTILSSRDHTCV
NPEVAPHSKRNELCKERLEAKDGRSCRYYHGVQKMGEQYLLQQVHGVSEAWDIEDLVSLG
KRLRSCSYFAARELMAEAVIIFCPYNYLLDPLIRESMDINLSGQILVLDEAHNIEDCARE
SASFTVNYDSLLASRDELESMVKNKIREAKHEPLQNFCYSLINWIQESQSLMSERGYESA
SKVWSGRDIVGIFHTLGITDATFNMLKANLAAVLEKEERLGFVNGKEDVVQIPTISSATS
AVLKGLFMVLDYLFRDKCRFAEDYRVALQKSYAWTNQVPPDAPDAQGFFVRPRQRQRQSI
RVKAEMLTLSFWCLNPAVAFSDLSNSLKSIVLTSGTLSPMGSFSSELGVKFSIQLEANHV
INKSQVWVGTVGAGPHGRKLCATFQHAETYTFQDEVGALLLHVCQVMAKGVLCFLPSYKM
LDKLRDRWSNTGLWEKLEQQKTVITEPRGGGKGDFDELLQTYYEAIKGCQERDGALLIAV
CRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHAKSRGLLSGHRWYEIQ
AYRALNQALGRCIRHRNDWGALILVDDRYKNNPNKYITGLSKWVRQLVQHHDTFSNAMQS
LGAFSREQQKVALIPADARTSSSTAASPHSHVCVTVEDQAAEPCSTASLVETPAPQQDAA
HSVSNIVPHTQVKSGEVENAECSRMLPIPPPAAPLLNPKARAVHPIFTSSPVRPSLKKPI
FKGKPPSNSSLPLEMSDFEDKEGQITSSSKDNEAGLIKAEVPDTFREVEEKTDAGAAFSD
WEDGPPGAAGAGEEDEDETIFFTPELFEDPSNGGSPHTEPTTEPPPGTRGPAACSDEPFE
KVQGGASCTGESPVSESERKKPEGEREGIRGEKEGVEGGQVDNQSRKTDKWLHRVSRSRQ
KVPSSPTGGGREARCVGRASRQIQISRQRTGRTRAGDEPQLAAPAAEISRAAQAGKKNRQ
DNICVNGMTGRLSMSTRGGKALKEERFPSTMTWSDLMTPGEDDLGWLHKAPRPAVGGPES
KRGNRSKTLPILGCCTKQTKDIFPLFRTRVGMDGDCQMYIFWLLNCSWVWMNRKLKPAFV
CLCEALRVRRSRRPKKRRRQAASQKTKARTTSTKVDLFSISLCTDFCHFLSLEPSHRALH
TILQYQVTSSIVNVKSLPAVLYNAVFQVCSWLFIPRQTCFCCRKRTRRASGDSTVHPA
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcatccccactggagtacaccatcgggggggtgaagatccagttcccccgtaag
gcctatccttcacaactggccatgatgaactcaatcatacgagggctgaacacggggcag
cactgtttactggagagtcctacaggaagcggaaagagcttagccttgttgtgctcgact
ctgggctggcagcaggctcagtatgtgaaactgcaagaaggcaggaatcccgtgggggag
aagggatggacagataaaagttttggagactgtaagaagttggatggaaccaactcctcc
tgccagtgtgtctgtcacagtagagccaacgtcagtgcctcagctacagctgcagacaca
cctgctgttgtagacctgactgtgtcaccctgcaaggagtcaaccctgccacctcctgca
gcagcagcaggacaaaggccttcatctgagggaacccaggccaaaaaaccttctctggcc
tcccgcctgtctcagaagttccaggtgttccgaaaggctgcgcctgaggaagatgatgat
ttccagccagacagaaaacgccttcgcactccagaacaaaagagctgtaagaggcagcgc
ctggagcagggagtcatattcatagatgatgatcaggagcccgaaaatgtcagccctggt
tggacaaaaagccagaaagctgggatggcgtcaccttgctgtgccactggcccctgcaca
cagtgctcatgtgcatccaaagacggtgcgaaggaccaaaacagcaaccggagggttccc
aagatcttcttcggcactcgcacgcacaagcagatcactcaggttgcccatgagctgagg
cgcaccgtctactccaaagtgcccatgacgatcttatcgagcagagaccacacctgtgtc
aatccggaggtggcgccccactccaagcgcaatgagctctgcaaggaacggctggaggcc
aaagacggcaggtcgtgccgctactaccatggtgtccagaaaatgggggaacaatacctg
ctacaacaggtccatggggtttctgaggcctgggacattgaggacctggtttctctgggc
aaacgtctccgctcctgttcctattttgctgccagagaacttatggcggaagctgtcatc
atcttctgcccctacaactatctgctggacccactgatcagggagagcatggatatcaac
ctctcaggccaaatcctggtgctggatgaagcccacaacattgaggactgtgcaagagag
agcgccagcttcaccgtaaactacgacagcctcctggcgtctagggacgagctggagagc
atggtcaaaaacaaaatcagagaagccaagcacgaacctctgcagaacttctgctacagc
ctgatcaactggatccaggagagccagagcctgatgtctgagcgaggatacgagagcgcc
agcaaagtctggagtgggagggacatcgtcggcatctttcacaccctgggcatcactgat
gcaacctttaacatgctgaaggccaacttggctgcagtgttggagaaggaagagcgactt
ggttttgttaacggcaaagaagatgtggtgcagatcccgactatcagctcagccacctcc
gccgtcctcaaaggtcttttcatggtcctggattacctcttcagagacaagtgcaggttt
gcagaagactacagggtggctctacagaagagctacgcttggaccaatcaggtcccgcct
gacgctcccgatgcccagggcttcttcgttcggcctcgccagagacaacgacagagtatt
cgagtcaaggcggaaatgctgacgctcagcttctggtgtctcaaccctgctgtggctttc
tctgacttgagtaactcgctgaagagcatcgtgttgacatcgggaaccctgtcaccgatg
ggttccttctcctctgaactcggggtaaaattctccatccagttggaggccaaccacgtt
atcaacaagtcccaggtttgggtgggcactgttggtgcgggaccccatggcagaaaactc
tgtgctactttccagcacgctgaaacttataccttccaggatgaggtgggggcgctgttg
ctacacgtctgccaggtcatggccaagggtgtgctctgctttctgccatcttataagatg
ttggacaaactgcgggatcgctggagcaacacgggtctgtgggagaagctagagcagcag
aaaactgtgatcaccgagcctcgcggcggtggaaaaggcgacttcgacgagctgcttcag
acctactacgaagcaatcaaaggctgccaagaaagagacggcgctctgctgattgctgtg
tgcagaggaaaggtgagtgaagggctggacttcaccgacgacaacgccagggccgtggtc
accattggaattcccttcccgaacatcaaagaccttcaggtggaactgaagatgaagtac
aacgaccagcacgccaagtccagaggtcttctctcggggcatcgttggtatgagatccag
gcctacagagctcttaaccaggccctggggaggtgcatccgccacaggaacgactggggc
gcgctgatcttggtcgatgaccgctacaaaaacaacccaaataaatacatcacaggtctg
tcaaaatgggtccgtcagctcgtccagcaccacgacaccttcagcaatgccatgcagtcg
ctgggagcgttctcccgggagcagcagaaggtggcgttgattccggcagacgctcggacc
tccagctcaactgcagcctccccacacagtcacgtgtgtgtaactgtggaggaccaggcg
gcagaaccttgttccacagcgtcacttgtggaaacacctgcaccccagcaggatgcagca
cactctgtgtccaacatcgtccctcacacgcaggttaagtctggagaagttgaaaatgca
gagtgctccagaatgttgccgattccccctccggcagcgccactgttaaatcccaaagca
agagccgtgcaccccattttcacctccagtcctgtcagacccagcttgaagaagccaatc
tttaaaggaaaaccaccctcaaactccagcctgcctttggaaatgtctgattttgaggac
aaagagggacagatcacctcttcgtcaaaagacaacgaggcaggtttgattaaagcagag
gttccggacactttcagggaagtagaggagaaaactgatgcaggagcagccttctccgac
tgggaagacggaccgcccggagccgccggtgctggagaagaagacgaggacgaaacgatc
ttcttcacccctgaactcttcgaggatccgagcaatggtggcagccctcacactgagcca
accaccgagccgccccctgggacgaggggtcctgcggcctgttcagatgaaccctttgag
aaggttcagggtggagcctcctgcacaggagagagccccgtttcagaaagtgagagaaag
aagccagagggagagagggaaggaatcagaggtgagaaggaaggtgtggagggaggacag
gtggataaccagagcagaaagacagacaagtggcttcacagggtgtccaggtccaggcag
aaagtcccgtccagcccaacaggtggaggccgggaggcgaggtgtgtagggagggcgagc
cgtcagatccagatcagccggcagagaacagggaggaccagagcaggtgatgagccacag
ctagccgccccggctgcagagataagtagagcggcacaagctggcaaaaagaatcgccag
gacaatatctgtgttaatggaatgactgggagactgtctatgagcacgaggggagggaag
gctcttaaagaagagcgttttccctccacgatgacttggtctgacctcatgacgcctgga
gaagacgacctgggatggctgcacaaggctcctcgtccagcggtgggcgggcctgaaagc
aagagaggtaacaggtccaaaacgcttcccattctcgggtgttgcacaaaacagacaaaa
gacattttccccctgttcagaactcgcgttggaatggatggagactgtcagatgtacata
ttttggttgctaaactgctcttgggtctggatgaatcgtaaactaaaaccggccttcgtg
tgtctctgtgaagccttaagagtgcgacgctctcgcaggccgaaaaagcgcaggcgtcaa
gcagcttcccaaaaaacaaaggccagaacaacgtccacaaaggtcgacttattctctata
tccttgtgtacagatttctgtcatttcctgtctttggagccctcccatagggcgctccat
acaatactccaataccaagttacctctagtattgttaatgttaaatctctaccagcagtg
ctgtataacgcagtttttcaggtttgttcctggttatttattccaagacagacttgtttt
tgttgcagaaagcggacccgccgtgcctccggggactctactgttcatcctgcgtga
DBGET
integrated database retrieval system
