KEGG   Toxoplasma gondii: TGME49_240590
Entry
TGME49_240590     CDS       T01093                                 
Symbol
POLR2E, RPB5
Name
(RefSeq) DNA-directed RNA polymerase II RPB5
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tgo  Toxoplasma gondii
Pathway
tgo03020  RNA polymerase
tgo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TGME49_240590 (POLR2E)
  09124 Replication and repair
   03420 Nucleotide excision repair
    TGME49_240590 (POLR2E)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tgo03021]
    TGME49_240590 (POLR2E)
   03400 DNA repair and recombination proteins [BR:tgo03400]
    TGME49_240590 (POLR2E)
Transcription machinery [BR:tgo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     TGME49_240590 (POLR2E)
  RNA polymerase III system
   RNA polymerase III
     TGME49_240590 (POLR2E)
  RNA polymerase I system
   RNA polymerase I
     TGME49_240590 (POLR2E)
DNA repair and recombination proteins [BR:tgo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TGME49_240590 (POLR2E)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat Toprim_3
Other DBs
NCBI-GeneID: 7894679
NCBI-ProteinID: XP_002366678
UniProt: A0A125YNC1
LinkDB
Position
VI:complement(join(1332822..1332887,1333200..1333274,1333524..1333607,1333850..1333909,1334083..1334164,1334353..1334460,1334657..1334799))
AA seq 205 aa
MEDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKV
DPDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRH
IIENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQSADPVARYFGL
SRGQVVKIIRPSETAGRYVTYRLVV
NT seq 618 nt   +upstreamnt  +downstreamnt
atggaggacagcacaagaagactatttcgagcacggaagacgtgctgtgacatgctccag
gaccgcggctacatcgtgtccgcacaggagaagaatgaatcgtggaatgattttctgcag
agattcaaagagaatgagtgcaaccgttcgcgaatgcttttaatcgcatcacacaaagta
gatcctgacaatcgggttattgtctactttgccgatgagacaaagaagaccggtgtgaag
ccgatcagagagcttacggagcgaatggaggaaagaaatatacagagggcgattttggtg
acgcagaacgtcctgacagccttcgccagagatgcgattagcgaggcagctccgcgccac
attatagagaacttcatggagtcggagttgttggtcaacattacaaagcatgagctagtg
ccgaagcacgtgcccctgacaaacgacgagaagcaaaatctcctcaatagatatcgagtc
aaagagattcagcttccaaggattcaatcggcagacccagttgcacgctattttggcttg
tcccgtggacaggtcgtcaaaatcatccgacccagtgaaacggcgggacggtacgtgact
taccgtcttgttgtgtga

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