Taeniopygia guttata (zebra finch): 100220989
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Entry
100220989 CDS
T01082
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100220989 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100220989 (CLP1)
Enzymes [BR:
tgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100220989 (CLP1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100220989 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
AAA_22
AAA_16
TniB
AAA_18
nSTAND3
MMR_HSR1
CbiA
PduV-EutP
AAA_24
Motif
Other DBs
NCBI-GeneID:
100220989
NCBI-ProteinID:
XP_002194451
Ensembl:
ENSTGUG00000007002
LinkDB
All DBs
Position
5:9121127..9123307
Genome browser
AA seq
425 aa
AA seq
DB search
MADDGGEEKKQVAKFELERETELRFEVEAGQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatggcggcgaggagaagaagcaggtggccaagttcgagctggagcgggag
acggagctgcggtttgaggtggaggcggggcagacggtgcagctggagctgctgaccggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggc
gccaaggtggccgtgttcacgtggcacggctgcaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctg
gagcagatgcggcgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtg
gggcccaccgacgtgggcaagaccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctcggtgtccatcccc
ggcaccatgggcgcgctgtacatcgagcggccggccgatgtggaggagggcttctccctg
caggccccgctcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcgtgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgg
gcgtcggtgagcggctgcgtcatcaacacctgcggctgggtcaagagctcgggctaccag
gcgctggtgcacgccgcctccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaacgagctcaagcgggacctgccccacttcgtgcgcaccgtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggaatgccgggacgagcgc
atccgcgagtacttctacggcttccgtggctgcttctacccgcacgccttcgacgtcaag
ttctccgatgtcaagatctacaaggtgggcgcgcccaccatcccggactcgtgcctgccg
ctgggaatgtcgcaggaggacaaccagctgaagctggtgccggtgacaccggggcgggac
atggtgcaccacctgctgagcgtcagcaccgccgacagccccgacgacaatatttctgag
accagcgtggccggcttcatcgtggtcaccggcgtggacctggagcgccaggtcttcacc
gtgctgtccccggctccgcgccccctccccaagaacttcctgctcatcatggacattcgc
ttcatggacctcaagtag
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integrated database retrieval system
