Taeniopygia guttata (zebra finch): 100222417
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Entry
100222417 CDS
T01082
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X2
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100222417 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
100222417 (POLR1A)
Enzymes [BR:
tgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100222417 (POLR1A)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100222417 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
BUD22
Motif
Other DBs
NCBI-GeneID:
100222417
NCBI-ProteinID:
XP_030126365
Ensembl:
ENSTGUG00000010704
LinkDB
All DBs
Position
4:5697274..5726500
Genome browser
AA seq
1708 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDS
REVCATCMQNFSNCPGHFGHIELPLAVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVHDLEVILNKFVEQCADATGSEIEEELNRHVQEMLQSSQIRDRCSN
VKNVRECRNKLVSQFWKAHMASKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYHKPGEEGI
LDQTAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGLYPNESSGFSPDMFFL
DLLVVPPSRYRPVNRLGDRLFTNGQTVNLQAVMKDAQVIRKLLVFMAKEQCQPIKITEEI
QTETGEDTEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLMTEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSHTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGDKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAITDKQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKIFPPAIMKPQRLWTGKQVVSTLLINIIPDNHAPLNLTGKAKIGGRAWVKGP
AKECLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKREADHKRKKIIERSRQSGIEVVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKAIKKWRARHQNS
VQREGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKQRKYLKKTNKC
PDPSLGVWRPDTYFASVSETFESGVEGYINKWESENSRSYTHSALSSDRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVLNTKKALKKVKQLKKLLTRVCLAEVLQKVDIEESLHVEHKLNKHRLYKIKFHFL
PHEYYREEKCVKPRQILHFMETRFFKVLLEAIKRKTTKMASFNEVSTRKTTRNDLDDGQD
KTLNNLEAVAEEEENIVDAEADEGDGDATETKRRKNQEEEVDYESEEENGEENINENPED
EEAESEKEEETPGAEEDQSRAEGEDSQHLSFVSQTKKGKDRLLQSAEVRVSAVVESHPSI
QDYTFDTENELWCEVSLALPLTKVYFDLSSLLGSLARSTVIHEVKGITRCLLNESTSKEG
EKESVLQTEGINLAELFKYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKEIKDVFAVY
GIVVDPRHLSLVADYMCFEGFYKPLNRIGIQSNSSPLQQMTFETSYKFLKDATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLR
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaagtggtgccgtggcggcggctggtcggggtgtccttcggcatgtac
acggccgaggagatcaggaagctgagtgtaaaacccataacaaacccgcagtacctggac
aacgtgggcaatccggctgtaaatgggctgtacgacctggccctgggacccccggactcc
agagaagtgtgtgccacttgcatgcagaacttcagcaactgccccggacacttcggccat
atagaactgcctctggctgtctacaaccccctgttcttcgataaattataccttctcatc
cgagggtcctgtttgaattgccacatgctgacctgtcccagagccgtggttcacctgctg
ctgagtcagctgaaggtgctggagaaggggctgctccacgctgtccatgacctcgaagtc
attctgaacaagttcgtggagcagtgtgcagatgcaacaggctcagaaatcgaggaagag
ttgaatcgccacgttcaggaaatgttacagagctctcaaataagagaccggtgctcaaat
gtcaaaaatgtgcgtgagtgtagaaataagctggtatcacaattctggaaagcacacatg
gcttcaaagaaatgcccaaactgcaaatccaggagatccctggtgcgaaaggagcacaac
agcaagctgacagtaacctatccttctacagtgtaccataagccaggagaggaaggcatt
ctggatcaaacagcaggcattgatgaaagccagttagggaagagaggatacctgacacca
atgactgccaaggaatacatcctggctctgtggaagaatgaaggtttctttctgcgttat
ctcttccctgggttgtatcccaatgagagttcaggattcagtccagacatgtttttttta
gatctacttgttgttccaccttcaaggtatcgtcctgtgaatcgccttggagatcgcctg
ttcacaaacgggcagactgtgaacttgcaggctgtgatgaaagatgcccaagtaataagg
aaactcttggttttcatggccaaagaacagtgtcagccaataaaaattacagaagaaatt
caaacagagacaggagaggatactgaacctctggaccgttctgtgctgacaacaattccg
ggacagagcattgcagataagctgtacaacgcctggatacgtctccagagccatgtcaac
attgtgtttgacagtgacatggacaagctgatgacagagaaataccctgggattcgtcag
ctgttggagaagaaggaagggctgttccgcaagcacatgatggggaagcgcgtggatttt
gcggctcgatccgtcatttgccccgacatgtacattgggaccaatgagattggcatccct
atggtatttgccaccaaactgacttatcctcagccagtgactccctggaatgtcaaagag
ctgaggcaggctgtcatcaatggccccaaggtgcaccctggggcctccatggtcattaac
gaggacgggtcccacacggtgctgagcgccaccagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggcaccccagaccgggctgaagattgtgtgtcgg
cacataaagaacggggatgtgctgctgctgaaccgccagcccacgctgcacagaccttcc
atccaagctcaccgcgcccgcatcctgcccggggacaaggtgctgaggctgcactacgcc
aactgcaaggcttacaatgctgacttcgatggggatgaaatgaatgcccacttcccacag
agtgagctgggcagagcagaggcctacaccttagccatcactgataaacagtacctggtg
ccaaaggatgggaagccacttcctggcttgatccaggatcacatgatttctggagtcagc
atgacaatccggggctgctttttcaccagagagcagtacatggagcttgtgtaccgaggg
ctcacagacaaaaaaggaagaattaaaatctttcctccagccattatgaagccacagcga
ttatggacaggaaagcaggttgtttccacattgctaataaacattattccagacaaccat
gctccactgaatttgactgggaaagcaaaaattggtgggagagcctgggtaaagggacct
gcaaaagaatgtctgaatcttgattcgatgtgtgaatctcaggttattatcagagatggg
gaactactgtgtggagtcttggacaaagctcactttggcagctctgcctacgggctggtc
cactgctgctatgagatctatgggggtgaaaccagtgggaaagtgctgacgtgtctgggg
cgcctcttcactgcttacctgcagctgtacaggggattcaccatggggattgaagatatt
ttggttaaacgtgaagcagaccacaaaagaaaaaaaatcattgaaaggtcaaggcagagt
ggcattgaagttgttagagctgctcttaatttgccagaaacagcatcatgtgaggaggtc
caagggaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaaattcaaggaggaagtaaacaattacaacaatgaagtcaacaaggtttgcatgccc
cttggtctccacaggagctttccagagaacaatttgcagttgatggtgcagtcaggagcc
aaaggatccactgtaaacacaatgcagatttcttgtttgctgggccagattgagctggaa
ggccgaagacccccactgatggcatctggcaaatcactgccatgtttccagccttatgat
ttttcccctagctcaggaggatttgtgactggcagatttctcactggaatcagaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacatttggaaggactggtggttcag
tatgacctgactgtacgagacagtgatggcagtgtggtgcagtttctgtatggagaagat
ggccttgatatccctaaaactcagttcttacaacctgagcagtttcctttcattgcagaa
aactatgaggtaatccagaagacaaaccatctggatgaagctttagcaaggatggagtct
caccaagctaaccagcagttcaaagccatcaaaaaatggcgagccagacaccaaaactct
gtgcaaagagaaggaggctttctgttgttttcccaaaagaagttggcaagtttgaaagca
cagcttccaggaggcgaaataaagaatggaagagatcctgctactttacagttgttgaag
atgtggtatgagcttgatgagaagaaacaaaggaagtatctgaagaagacaaataagtgt
cctgacccaagccttggggtttggcgtccagatacttattttgcatctgtttcagaaaca
tttgaaagtggagttgaaggctatatcaataaatgggaatctgagaacagccggagttac
acgcactcagcactttcttctgatagattgaaggatctgttatatttaaagtggcagcgc
tctctttgtgacccaggagaagctgtggggcttcttgctgctcagagtattggggaacct
tcaacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcaca
ttgggtattccaaggttgcgggaaatactgatggtggccagctcaaacattaaaaccccg
atgatgagtgttcctgtgctcaataccaagaaagctctcaaaaaggtgaaacagcttaag
aaactgctcacaagagtgtgcttggctgaggtcttgcagaaagtggacatcgaggaatcc
ctgcatgtggagcacaagctgaacaagcatcgcctctacaaaatcaaattccatttcttg
ccccatgaatattaccgagaggagaagtgtgtgaagccaaggcagatcttgcacttcatg
gaaacaaggttctttaaagttcttctggaagcaattaaaaggaagactacaaagatggca
tcttttaatgaagtcagcactcggaagacaactcggaacgatttagatgatggccaagac
aagacactgaataatctggaagctgtagcagaagaagaagagaacattgttgatgcagaa
gctgatgaaggggatggtgatgctacagaaacaaaacggaggaagaaccaggaagaagag
gttgattatgagagcgaagaagagaatggggaagaaaacataaatgagaacccagaagat
gaagaggctgaatctgaaaaagaagaagagactcctggtgctgaagaagatcagagcaga
gcagagggtgaagattctcagcatctttcctttgtgtctcagactaaaaaagggaaagat
cgattgcttcagtcagcagaagtgcgagtgagcgctgttgtggagagccacccgtccata
caggattacacctttgacaccgaaaatgagctttggtgtgaggtttccttggcattgcca
ctgactaaggtgtactttgacctctcctccctgctggggtccctggcgcgcagcacggtg
atccacgaggtgaagggcatcacacgctgcctgctgaacgaaagcaccagcaaggaggga
gagaaggaatctgttctccagactgaagggataaacctggcagagctcttcaaatactct
gatattttggacctgaacagactttattgcaatgatatccatgccatggctaagaattat
ggaattgaatcagccctgagggtgattataaaggaaataaaagatgtatttgctgtatat
ggaattgtggtagaccctcgacacctttcgcttgtggcagattacatgtgttttgaaggc
ttttataaacccctgaatcgcattggaattcagtccaactcctcccctctgcaacagatg
acgtttgaaaccagctacaaattcttgaaggatgcaaccatgatgggtgcccacgatgag
ctgcgatccccttcggcctgcctggtggttggaaaagttgtcaaaggagggactggcttg
tttgacctcaagcagcccctgagatag
DBGET
integrated database retrieval system
