Taeniopygia guttata (zebra finch): 100224584
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Entry
100224584 CDS
T01082
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tgu04040
]
100224584 (SCN4A)
Ion channels [BR:
tgu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100224584 (SCN4A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
100224584
NCBI-ProteinID:
XP_030112168
LinkDB
All DBs
Position
27:5326556..5360110
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AA seq
1847 aa
AA seq
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MAGLPHIPGPENLRPFTPASLAAIEQRMAEAEALRIKRQQVEMPEEEEIKPSSDLEAGKN
LPLIYGDPPVELIGTPLEDLDPFYKDKKTFIVLNKGKSIFRFSATPALYMLGPFNPIRRG
AIKVLIHSLFSMFIMITILTNCVFMTMSNPPAWSKNVEYAFTGIYTFESLIKILSRGFCI
DDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPPPNSTFLQDLGPDNDTSAN
STFYGFMDDFTGNFTGNFTGNFTGNSTFDFEAYISDEANFYFLEGALDALLCGNSSDAGK
CPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDFWENLFQLTLRAAGKTYMIFFV
VVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQLMEQLKKQQEEQERLLQE
RSSSSNSLPSSVAGKGHDSDLNSDQDKAKDCNGQVVPKITLQRSDTVIDFNLTHEPEKPD
LNHLTVGNQDGPGLEKRVGSAISVISNAVEELEEAHQKCPPWWYKFAHTFLVWNCCRPWV
KLKEFVKLVVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEM
VLKLIALDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYIECVCKISVDCTLPRWHMN
DFFHSFLIVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSF
SADSLAASDDDGEMNNLQIAIGRITRGIAFTKASLLALLRRLWKGKKVAPEEEQEPSKRD
NSVLNHVDTALEPKSGYLDGIMGKEHIFMDELDHMNFINNPNLTVQVPIASEESDLYEET
STQSDTEDTTKGVPLNPLSSDNASSVCSTVDYKPPAPEEEEVAEVAEESNEPEECFTEGC
VKRFPCLYVDITSEKGRIWWNLRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQR
KVIRTILEYADKVFSYIFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLVSLTANWLG
YSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMG
VNLFAGKYYRCVNTTTGELFDIDVVNNRSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLL
QVATFKGWMDIMYAAVDSREIEEQPQYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNF
NQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGKVFDFVTKQVFDIT
IMILICLNMVTMMVETDDQSELKTSVLYKINLVFIVIFTGECVLKMFALRHYFFTVGWNI
FDFVVVILSILGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMS
LPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGW
DGLLNPILNSGPPDCDPELENPGSLVKGDCGNPAIGIFFFCSYIIISFLIVVNMYIAIIL
ENFSVATEESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLRVPKPNK
IKLITMDLPMVAGDKIHCLDILFALTKEVLGDSGEMDALKATMEEKFMAANPSKVSYEPI
TTTLKRKHEEVCATKIQRAFRRYLLRRSVKQASYMYRHSQDTLGEDAPEKEGLIATKMQE
IYGNSGTDVDTAPALGLKPIPSSETPQDAPEEAQAWGKEHVVKESLV
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctgccgcacatcccgggccccgagaacctgcgccccttcaccccggcctcg
ctggccgccatcgagcagcgcatggccgaggccgaggcgctccggataaagcggcagcag
gtggagatgcctgaggaagaggagatcaagcccagcagtgacctggaggccggcaagaac
ttgcccctcatctatggtgacccacccgtggagctcatcgggacccccctggaggacctg
gaccctttctacaaggacaagaagacgttcatagtcctcaacaagggcaagtccatcttc
cgcttctcagccacccctgccctctacatgctggggcccttcaaccccatccgcagagga
gccatcaaagtcctcatccattcattattcagcatgttcatcatgatcaccattttaacc
aactgcgtgtttatgacgatgagcaaccctccagcatggtccaagaacgtggaatacgcc
ttcactggcatctacaccttcgagtctctcatcaagatcctgtcgagaggcttctgcatc
gacgacttcacattcctgcgggacccctggaactggctggacttcatggtcatctccatg
gcctacattaccgagttcgtggacctggggaacatctccgctctcaggaccttccgtgtc
ctccgtgccttgaaaaccatcacggtgataccagggctgaagacgatcgtgggggctctg
atccagtcagtgaagaagctctcggacgtgatgatcctcacggttttctgcctgagcgtc
ttcgctctcatcggcctccagctcttcatgggcaacctgcggcagaagtgcgtgcgctgg
cctccccccaacagcaccttcctgcaggacctggggccggacaacgacacctcggccaac
tcaaccttctacggcttcatggatgacttcaccgggaacttcaccgggaacttcaccggg
aacttcaccgggaacagcacctttgacttcgaggcctacatcagtgatgaagccaatttt
tacttcctggagggagccctggacgccctgctctgcgggaacagcagcgacgctgggaag
tgccccgagggctacgagtgcatgaaggccgggaggaaccccaactatggctacaccagc
tatgacaccttcagctgggccttcctggccctcttccgcctcatgacccaggacttctgg
gagaacctcttccagctgacactgagggcagcagggaaaacctacatgatcttcttcgtg
gtggtcatcttcctgggctccttctacctcatcaacctcatcctggccgtggtggccatg
gcttatgccgagcagaacgatgccaccatgctggaggagcagcagaaggaggaggaattc
cagcagctcatggagcagctgaagaagcagcaagaggagcaggaaaggctgttgcaggag
cgctcgtccagcagcaattccctgcccagcagcgtggccgggaaggggcacgactcggac
ctcaacagtgaccaggacaaggccaaggactgcaacgggcaggtggtgcccaagatcacc
ctgcagagatccgacaccgtgattgatttcaacctcacccatgagccggagaagccagac
ctcaaccacctcactgtgggcaaccaagatgggccagggctggagaagagggtgggaagt
gctatcagtgtcatctccaacgctgtggaagagctggaagaagctcaccagaaatgccca
ccctggtggtacaaatttgcccacacattcctggtctggaattgctgccgtccatgggtg
aagctgaaggagtttgtcaagctagtggtgatggacccctttgtggatctgggcatcacc
atctgcatcgtgctcaacactctcttcatggccatggagcactaccccatgacagaagag
ttcgagaacgtgctgaccgtggggaacctggtcttcaccgggatcttcaccgcggagatg
gtcctgaagctcattgctctggatccctacgagtatttccagcagggctggaacatcttt
gacagcttcattgtcactctgagcctggtggagctgggcttggccaacgtgcaggggctc
tccgtgctccgctccttccgcctgctgagggttttcaagctggccaagtcctggcccact
ctcaacatgctcatcaagatcatcggcaactccgtgggtgccctgggcaacctcacgctg
gttttggccatcatcgtcttcatcttcgccgtggtggggatgcagctctttggcaagagc
tacatcgagtgcgtgtgcaagatctctgtggactgcaccctgccccgctggcacatgaac
gacttcttccactccttcctcatcgtcttccgcatcctctgcggggagtggatcgagacc
atgtgggactgcatggaggtggccggccagaccatgtgcctcatcgtcttcatgatggtc
atggtcatcggcaacctcgtggtgctaaacctgttcctggctctgctgctgagctccttc
agcgctgacagcctggcggcgtcggacgacgatggggagatgaacaacctgcagatcgcc
atcggccgcatcacccgcggcatcgccttcaccaaggcctcgctcctggcgctgctgcgc
cggctctggaagggcaagaaggtggcaccagaggaagaacaggagcccagcaagagggac
aactctgtgctcaaccacgtggacacggccctggagcccaagtcagggtacctggatggc
atcatgggcaaggagcacattttcatggatgagctggaccacatgaatttcatcaacaac
cccaacctgacggtgcaggtccccatcgcctctgaggagtccgacctctacgaggagacc
agcacccagtctgacaccgaggacaccaccaagggagtccctctgaaccccctgtccagc
gacaacgcctcgtccgtgtgcagcacggtggattacaaaccgcccgcgcccgaggaggag
gaggtggcagaagtggctgaggagagcaacgagcccgaggagtgtttcactgagggctgt
gtgaagaggtttccctgcctctacgtggacatcaccagtgagaaggggaggatttggtgg
aacctcaggaaaacctgcttccgcatcgtggagcacgactggtttgagaccttcatcgtc
ttcatgatcctcctcagcagtggggcactggctttcgaggacatctacatcgagcagcgc
aaggtgatccgcaccatcctggaatacgcagacaaggtcttctcctacatcttcgtcatc
gagatgttgctcaagtgggtggcctatggcttcaaggtgtacttcaccaatgcctggtgc
tggctggatttcctcatcgtggatgtgtccctggtcagcctgacagcaaactggctggga
tattccgagctaggagctatcaaatccctgcggacactgagggctctgcgacccctgcgt
gctctgtcccggtttgagggcatgagggtggtggtgaatgccctgctgggtgccatcccc
tccatcatgaacgtccttctggtctgcctcatcttctggctgatcttcagcatcatgggg
gtgaacctgttcgcagggaagtactacaggtgcgtcaacaccaccaccggggagctcttc
gacatcgacgtggtcaacaacaggagcgactgcatggccctgctccacaccaacgaggtc
agatgggtcaacgtcaaggtcaactttgacaacgtgggcttgggatacctgtccctgctg
caggtggcaaccttcaaaggctggatggacatcatgtacgcggctgtggactcacgtgag
attgaagagcagccacagtatgagatcaacctctacatgtacatctacttcgtcatcttc
ataatctttggtgccttcttcaccctgaacctcttcataggcgtcatcattgacaacttc
aaccaacagaagaaaaagtttggaggcaaagacatcttcatgacggaagagcagaagaaa
tactacaacgccatgaagaagctgggctccaagaaaccccagaagcccatccccaggcca
gcgaacaaattccaagggaaggtgtttgactttgttaccaaacaagtgtttgacatcacc
atcatgatcctgatttgcctgaacatggtgaccatgatggtggaaacagatgaccagagc
gagctcaaaacctctgtcctctacaagataaacctggtcttcatcgtcatcttcaccggg
gagtgtgtgctcaagatgttcgccctgcgccactacttcttcactgtaggctggaacatc
ttcgacttcgtggtggttatcctctccatcctaggtatcgtcctctcagacatcatcgag
aagtactttgtgtcccccaccctcttcagggtcatccggctggcgaggatcggccgcgtg
ctgcggctgatccgaggagccaaaggcatccggacactcctctttgccctgatgatgtcc
ctgcctgccctgttcaacatcggcctcctgctcttcctcgtcatgttcatctactccatc
ttcggcatgtccaacttcgcctacgtcaagaaggagtcaggcattgatgacatcttcaac
ttcgaaacctttgggaacagcatcatctgcctcttccagatcaccacgtcggcggggtgg
gatgggctcctcaaccccatcctcaacagcggccccccggactgcgaccccgagctggag
aaccctgggagtttggtgaaaggagactgtgggaaccccgccatcggcatcttcttcttc
tgcagctacatcatcatctccttcctcatcgtggtgaacatgtacatcgccatcatcctg
gagaacttcagcgtggccacggaggagagcagcgagcccctctgtgaagacgattttgaa
atgttttatgaaacttgggagaagtttgacccagacgccacccagttcatcgcctacagc
accttgtctgactttgtggacaccttgcaggagccactcagagttcccaagcccaacaag
atcaaactcatcaccatggatctaccaatggttgctggggacaaaatccactgcctggac
atcctctttgccctgactaaggaagtgctgggagactcgggagagatggatgccctgaag
gccaccatggaggagaagttcatggctgccaacccctcgaaggtttcctatgaacccatc
accaccaccctgaagaggaaacacgaggaggtgtgtgctaccaagatccagagggctttc
cggaggtacctcctgaggcgctcggtgaagcaggcgtcctacatgtacaggcacagccag
gacaccctgggtgaggacgcgcccgagaaggaagggctgatagccaccaaaatgcaggag
atctatgggaacagtgggacagacgtggacactgcccctgccttgggcctcaagcccatt
cccagctcagagacaccccaggatgctcctgaggaagcacaggcgtggggtaaggaacat
gtggtgaaagagtcgctggtgtaa
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integrated database retrieval system
