Thalassospira marina: CSC3H3_19100
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Entry
CSC3H3_19100 CDS
T05224
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
thac
Thalassospira marina
Pathway
thac03030
DNA replication
thac03410
Base excision repair
thac03420
Nucleotide excision repair
thac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSC3H3_19100
03410 Base excision repair
CSC3H3_19100
03420 Nucleotide excision repair
CSC3H3_19100
03440 Homologous recombination
CSC3H3_19100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thac03032
]
CSC3H3_19100
03400 DNA repair and recombination proteins [BR:
thac03400
]
CSC3H3_19100
Enzymes [BR:
thac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CSC3H3_19100
DNA replication proteins [BR:
thac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSC3H3_19100
DNA repair and recombination proteins [BR:
thac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CSC3H3_19100
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSC3H3_19100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AUG54590
LinkDB
All DBs
Position
4217682..4220504
Genome browser
AA seq
940 aa
AA seq
DB search
MTDTAQPPRRVVLVDGSGFIFRAFHALPPMNSPDGTPVNAVYGFCTMLMKLREDTRPDHM
AVIFDTKGKSFRNDFYPDYKAHRPPPPEELIPQFGLIRDAVRAFNLPSIELEGYEADDLI
ATYARQAAEQGADVIIVSSDKDLMQLVTDRVEMFDAMKNRTIRADEVMEKFGVAPDKVID
VQALAGDPVDNVPGVPGIGVKTAAQLITEYGDLDTLLERAGEIKQPKRREKLLENADMAR
VSRDLVRLKTDVPVTLPVDDFDLREPDADVLLSFIATHGFKSLTSKVKAKFGGTVDENGI
TEAGTGVNDVSVTKAEYELVQDEESLKKWIAKADYEGVLAVDTETTSLNAHQARLVGISI
AVKPGEACYIPLTHGMGDEETEPKAAQGGFDFGSDPAGDKETADIPKQIPVKRTIELLKP
LLEDRGVLKIGQNIKYDKIIFARHGIDVAPIDDTMVLSYVLDGTSHGHGMDELADLHLGY
KTIKFTDVAGTGKNQLTFDQVPLDKALDYAAEDADITLRLHRLLKPRIAQEHMASVYETL
DRPLVPVLAKMEALGVKVDADKLRDLSSDFATRMAALETTIHEMAGETFNLGSPKQLGEI
LFEKMSLPGGKKTKTGAWQTGADVLEALAAQGHDLPERLLEWRQLSKLKSTYTDALANHI
NPQTGRVHTSYGQTNVNTGRLSSNDPNLQNIPIRSEEGRKIRTAFIADKGCKLISADYSQ
IELRLLAHVAEIDALRNAFKNGEDIHASTASKVFGVPIEGMDPMVRRKAKAINFGIIYGI
SAFGLANQLGIPQKEAKEFIEAYFEIYPGIRDYMDRAKEFAKTHGMVRTLFGRKIFINGI
NDKNGMRRSFGERAAINAPIQGGAADIIKRAMIAVPGALQDAGLKTRMLLQVHDELIFEA
PEAETEQAVKVIRDVMENAASLSVPLIADAGIGDSWADAH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatactgcccagcctccccgccgcgtcgtcctggttgacgggtccggctttatt
ttccgcgcgtttcacgcattgccgcccatgaacagccccgacggaacccccgtcaatgcc
gtttatggcttttgcaccatgctgatgaagctgcgcgaagatacccgccccgatcatatg
gcggtaattttcgataccaagggcaaatcgttccgcaacgatttttatccggattacaag
gcacaccgtccgccccccccggaagagctgatcccccagtttggcctgatccgcgatgcc
gtgcgggcctttaacctgccctcgatcgaacttgaaggctatgaagccgacgacctgatc
gcaacctatgcccgccaggccgccgaacagggtgccgatgtgatcatcgtgtcctcggat
aaggacctgatgcagcttgtgactgaccgtgtcgaaatgtttgatgcgatgaaaaaccgc
accattcgcgcagacgaggtgatggaaaaatttggcgtcgcacctgacaaggtcattgat
gtgcaggccctggctggcgacccggtcgataacgtgcccggtgtgcccggaattggcgtt
aaaaccgccgcccagctgattaccgaatatggcgatctggatacgcttctggaacgcgcc
ggtgaaattaagcagccgaaacgccgtgaaaagctgctggaaaatgccgatatggcccgc
gtttcgcgcgatctggtccgtctgaaaaccgatgtgcccgtcaccctcccggtcgatgat
tttgacctgcgcgaacccgatgccgatgtactgctatcctttatcgcgacccatggcttc
aaatcgctgacatcaaaggtaaaggccaaatttggcggtaccgttgatgaaaatggtatc
accgaagccggtaccggcgtgaatgacgtcagtgtcaccaaggccgaatatgaactggtc
caggatgaagaaagcctgaaaaaatggatcgccaaggccgattatgaaggcgttctggcg
gttgataccgaaaccacgtcgcttaatgcccatcaggcgcgactggttggtatttccatc
gccgtgaaacccggcgaggcttgctacatcccgctgacgcatggcatgggcgacgaagaa
accgaacccaaagccgcccagggcgggtttgattttggcagcgaccctgccggtgacaaa
gaaactgccgacatccccaaacagatcccggtcaaacgcacaatcgagcttttaaaaccc
ctgcttgaagatcgcggggttctgaagatcgggcagaatatcaaatatgataaaatcatc
tttgcccgtcacggcatcgatgttgccccgattgatgacaccatggttctgtcctatgtg
cttgatggcaccagccacgggcatggcatggatgaactggcggatctgcatctaggctat
aaaaccatcaaatttaccgatgtcgcaggtacgggcaaaaaccagcttacctttgaccag
gtcccgctggacaaggcgctcgattacgccgccgaggatgccgatatcaccctgcgtctg
catcggctgttaaagccgcgcatcgcccaggaacatatggccagcgtttatgaaacgctg
gaccgtccgctggtgccggttctggcaaagatggaagcgttgggcgttaaggtcgatgcc
gacaagctgcgcgacctgtcatcggactttgccacccgtatggctgcgcttgaaacaacc
attcatgaaatggcgggcgaaacctttaaccttggcagccccaagcagctaggcgaaatc
ctgtttgagaaaatgagcctgccgggcggcaaaaaaaccaaaaccggcgcctggcaaacc
ggtgccgatgtgcttgaagccctggccgcacagggccacgacctgcctgaacggcttttg
gaatggcgccagctgtccaagctcaaaagcacctataccgacgcgctggcaaaccacatc
aacccgcaaaccgggcgtgtgcacaccagctatgggcagaccaacgtcaataccggccgc
ctgtcttccaatgatccgaacctgcagaacattccgatccgcagcgaagaaggccgcaaa
atccgtacagcctttatcgccgataaaggctgcaagctgatttcggctgactattcgcaa
atcgaactgcgccttctggcccatgttgccgaaatcgatgccctgcgcaatgcctttaaa
aatggcgaggatattcacgcctcgaccgcctcaaaggtgtttggtgtacccatcgaaggc
atggacccgatggtgcgccgcaaggccaaggcaatcaactttggcatcatttacggtatt
tcggcctttggcctcgccaaccagcttggcattccgcaaaaagaagccaaggaattcatc
gaagcctattttgaaatctatcccggcatccgcgattacatggaccgcgccaaagaattt
gccaaaacccatggcatggtgcgtaccctgtttggccgtaagattttcatcaatggcatc
aatgataaaaacggcatgcgccgcagctttggcgaacgtgcggccatcaacgccccgatc
cagggcggtgcagccgatatcatcaaacgcgccatgatcgcggttcccggcgccctgcaa
gatgctggccttaaaacccgcatgctgttgcaggtccacgacgaactgatctttgaagcc
ccggaagcggaaaccgaacaggcggtaaaagtcattcgcgatgtgatggaaaatgccgcc
agcctttccgtgccgcttattgccgatgccggcattggcgatagctgggctgatgcacat
taa
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