Thalassobaculum sp. OXR-137: T8K17_10405
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Entry
T8K17_10405 CDS
T09627
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
thar
Thalassobaculum sp. OXR-137
Pathway
thar00540
Lipopolysaccharide biosynthesis
thar01100
Metabolic pathways
thar01250
Biosynthesis of nucleotide sugars
Module
thar_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
T8K17_10405 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
thar01005
]
T8K17_10405 (rfaD)
Enzymes [BR:
thar01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
T8K17_10405 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
thar01005
]
Core region
T8K17_10405 (rfaD)
BRITE hierarchy
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
WPZ36548
LinkDB
All DBs
Position
complement(2220428..2221411)
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AA seq
327 aa
AA seq
DB search
MIIVTGGAGFIGSNLVAGLEEAVGGDIVVVDRLGTDDKWRNIAKRDLAAIVPPEDFFDFL
NDHRGDVEAIFHLGAISATTERDADLIVRENITLPTRLWHWCAETRTRLIYASSAATYGD
GAAGFEDDDSPEGLSTLRPMNAYGWSKHAFDRQAVKMAAAGVHPPQWVGLKFFNVYGPNE
YHKGTMKSVIAQITPKIAAGESAKLFTSHNPDYPDGGQLRDFVYVDDCVRVMLWLLETPH
VNGIFNLGTGSARSFADLARAVFSALGQEERIEFIEMPEAIRDRYQYFTQARMDRLREAG
YPEQFTSLEEGVRRYVKGFLTSDDPYR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcgtcaccggcggcgccggtttcatcgggtccaacctcgtcgccggccttgag
gaggcggtgggcggggacatcgtcgtggtcgaccgcctaggcaccgacgacaagtggcgc
aacatcgccaagcgcgacctggccgccatcgtgccgccggaagatttcttcgacttcctc
aacgaccatcgcggcgacgtggaggcgatcttccacctgggcgccatctcggcgaccacc
gagcgcgacgccgacctgatcgtgcgcgagaacatcaccctgccgacccggctctggcat
tggtgcgcggagacccgcacccggctgatctacgcctcctcggccgctacctatggggac
ggcgccgccgggttcgaagatgacgacagcccggaaggcctttccaccctgcggccgatg
aacgcctatggctggtccaagcacgccttcgaccggcaggcggtgaagatggcggcggcc
ggggtgcacccgccgcaatgggtcgggctcaagttcttcaacgtctacggcccgaacgag
taccacaaggggacgatgaagagcgtgatcgcccagatcaccccgaagatcgccgccggc
gagagcgccaagctcttcacctcccacaacccggactatcccgacggcgggcagctccgc
gacttcgtctatgtggacgactgcgtgcgggtgatgctgtggctgctggagacgccgcat
gtgaatggcatcttcaacctaggcaccggctcggcccgcagcttcgccgacctcgcccgc
gcggtgttctcggccctcggtcaggaggagcggatcgagttcatcgagatgcccgaggcg
atccgcgaccgctaccaatacttcacccaggcgcgcatggaccggctgcgcgaggccggc
tatccggagcagttcacctccctggaggaaggcgtgcggcgctacgtgaagggcttcctc
acctccgacgacccgtaccgctga
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