Thermococcus sp. 5-4: CDI07_01935
Help
Entry
CDI07_01935 CDS
T05088
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
thh
Thermococcus sp. 5-4
Pathway
thh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDI07_01935 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thh03021
]
CDI07_01935 (rpoB)
Enzymes [BR:
thh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDI07_01935 (rpoB)
Transcription machinery [BR:
thh03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
CDI07_01935 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Auto_anti-p27
NOB1_Zn_bind
RNA_pol_Rpb2_45
DUF5816
Cys_rich_CPCC
Motif
Other DBs
NCBI-ProteinID:
ASA77107
UniProt:
A0A1Z2TKY5
LinkDB
All DBs
Position
complement(335265..338633)
Genome browser
AA seq
1122 aa
AA seq
DB search
MASRGPTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQKVIDEFGGIKPDIP
DFEVKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVVNGIAQEAVEV
RIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLV
ERDERQNRVIAKCFSYRHGYRALITVERRKDGILYVNIPNVPRPVKFVYVMRALGVLSDK
EIVEAVSDDPRIQQVLFDNLEDASDITTQEDALDYIGKLALPGQPKEYRLRRAQHIIDNN
LLPHMGVEEKDRSAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRV
AFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGAWPGGRT
GVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVK
NLSLMAQITTGIPEEEARDYLNRLGVIPIEEQRPNPELWRVYLNGVLIGTVEDGEGLVNR
IRTDRRSGRISDVINVAIYQDEEVREIYVNSDDGRVRRPLIIVENGKPKLTKEHIEGIKN
GTLTWSELVKMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPE
HNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAG
QNFVVAVLSYGGYNMEDAVIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEVPDPT
IQGYLGEKYYRHLDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSV
AVRPSERGIVDKVILTETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDM
PWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVAALKGRRVDGTAFIGEPEEKLRKEL
EELGFKHSGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT
EGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKV
YCPVCGEEEKISKVEMSYAFKLLLDELKAMGIRPSLNIVDRV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgagaggaccgaccgttgttgatgttactcccgacgacctctggctcgttatg
gaggcatactggaaggagaagggactggttagacagcaccttgactcttacaacgccttc
atagactacgggatgcagaaggtcatagacgagttcggcggcatcaagccggacatcccc
gatttcgaggttaagtttggaaaggttcgcctcggcgagcccgagttccaggaagcccag
gggcagaggaagcccctctacccgatggacgcaaggatcagaaacctgacctattctgcc
ccgctgtaccttgagctcattcccgtcgtcaacggcatcgcccaggaggccgtcgaggtt
cgcatcggagagcttccgataatgctcaaatccaaggcgtgcaggctctacggtctcagc
gacgaagagctgataaagctcggcgaagacccgaaggatccgggaggatacttcatcatc
aacggttccgagagggttatagtttctatcgaggacctcgccccgaacaagaccctggtt
gagagggacgagaggcagaacagggtgatagccaagtgcttctcttacaggcacggctac
agggctttaataaccgtcgagagaaggaaggacggaattctctacgtcaacatcccgaac
gttccaaggcccgtcaagttcgtctacgtcatgcgcgcgctgggcgttctcagcgataag
gaaatcgttgaagctgtgagtgacgacccgcgcatacagcaggttctcttcgacaacctt
gaggacgcaagcgacataaccacccaggaggacgctctcgactacataggaaagctcgcc
ctccccggccagccgaaggagtacaggctcagaagggcccagcacataatagacaacaac
ctcctgccccacatgggcgttgaggaaaaggacaggagtgcgaaggcctactacctcggc
atgatggccctcaaggttctggagctctcccttggactccgtggcgaggacgacaaggac
cactacgccaacaagaggcttaagctcgctggagaccttttgagggacctcttccgtgtt
gcctttggtcagctggtcaaggacatgcagtaccagatgaccaagacataccagaggaag
ggtgagcgctacaccttcgagaacatccagcgctttgtgagaaactccataagaccggac
gtcctcagcgagaggatagaacatgctctcgctaccggcgcatggccgggcggaaggacc
ggtgtgagccagcttctggacagaaccaactacatgtcaaccctttctcacctcaggcgc
gttacttccccgctcagcagggatcagccccacttcgaggcgcgtgaccttcacggaacc
cactggggtaggatatgtccgacggaaactccggaaggtccgaactgtggtctcgtcaag
aacctctccctcatggcccagataaccaccggaattccagaggaagaggccagagactat
ctgaacagactcggcgttatcccgatagaggagcagagaccgaaccctgagctctggcgc
gtctacctcaacggagttctgataggaaccgtggaagatggagagggactcgtgaacaga
ataagaaccgacaggagaagcggaaggataagcgacgtcataaacgtcgccatctaccag
gatgaggaggtcagggagatatacgtcaacagcgatgacggccgcgtcagaaggccgctc
atcatagtcgagaacggcaagccgaagctcaccaaggagcacatcgagggaataaagaac
ggcaccctgacctggagtgagctcgtaaagatgggcgtcatcgagtacctcgatgcagag
gaagaggagaacgcctacgttgccacctggccgtgggaagtcaccgaggagcacacccac
ctcgagcttatgcccgccgcgatactcggtattccggcttcactcgttccgtatccggag
cacaacgcggccccgcgtaacacatacggcgcaggtatggccaagcagagcctcggtctc
ggctgggccaacttcaggattcgcgttgacacccgcgggcacctcatgcactacccgcag
gttccgctcgtcaactcaaggataatgaaggccgtcggtttcgaggagaggcctgccggt
cagaacttcgtggtcgctgtgctgagctacggcggatacaacatggaagatgcggtcatc
atgaacaaggcctccatagagcgcggtcttgctcgctcaaccttctttagaacctacgag
gccgaggagaagaggtacctcggtgggcagaccgaccgcttcgaggttccagacccgaca
atccagggctatctcggcgagaagtactacaggcacctcgacgaggacggtataatcttc
ccggagtcaaaggtctccggcaaggacgtcctcgttggaagaacctcaccgccgaggttc
cttgaggagcagagtggcctcggaggcataatcctccaggagaggcgcgaaacgagcgtt
gccgtcaggccaagcgagaggggcatcgtggacaaggttatcctgaccgagacgggcgac
ggaaccaagctcgtcaaggtaaccgtgagggacctccgtattcccgagttcggagacaag
ttcgcttcgaggcacggtcagaagggtgtcataggcctcatcgtcccgcaggaagacatg
ccctggaccgagagcggaatagtgccggacctcatagttaacccgcatggtatcccgagc
cgtatgaccgtcggacagctcatagaggccatcggcggaaaggtcgcggcattgaaggga
aggagagttgacggcactgcattcatcggagagccggaggagaagctcaggaaggagctt
gaggagctcggattcaagcacagcggcagggaagtcatgtacgacggcataaccggaagg
cgccttgaggcggacatattcgtgggtgtcatctactaccagaggctccaccacatggtc
gctgacaagatgcacgcaaggagcaggggtccggtgcaggttctcaccaagcagccgacc
gagggaagggccagagaaggtggtctcaggttcggtgagatggagcgtgacgtcctcatc
ggccacggtgctgcgatgctgctcatagagagactgctcgaagagagcgataagaccgag
gtatgggtctgcgagagctgtggacatctggcactcgaagacaagcgcagaggaaaggtc
tactgcccggtctgtggagaggaagagaagataagcaaggtggagatgagctacgccttc
aagctgctgctggacgagctgaaggcgatgggaataaggccgtctctcaatatagttgac
agggtgtga
DBGET
integrated database retrieval system
