Tepidibacter hydrothermalis: P4S50_06470
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Entry
P4S50_06470 CDS
T09528
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
thyr
Tepidibacter hydrothermalis
Pathway
thyr03030
DNA replication
thyr03430
Mismatch repair
thyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P4S50_06470
03430 Mismatch repair
P4S50_06470
03440 Homologous recombination
P4S50_06470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thyr03032
]
P4S50_06470
03400 DNA repair and recombination proteins [BR:
thyr03400
]
P4S50_06470
Enzymes [BR:
thyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P4S50_06470
DNA replication proteins [BR:
thyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P4S50_06470
DNA repair and recombination proteins [BR:
thyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P4S50_06470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
DNA_pol3_a_NII
Rv2179c-like
tRNA_anti-codon
DNA_pol3_a_NI
RNase_H_2
DEDDh_C
GIDA_C
zf-RING_5
Motif
Other DBs
NCBI-ProteinID:
WFD11716
LinkDB
All DBs
Position
1452731..1457011
Genome browser
AA seq
1426 aa
AA seq
DB search
MDSIKKYLEKIGVYNKLDKKYDNVLLSNIVYFKEDKIVYFYLESKEILNISEIRDIESKI
KNELTFFNDVKFRIRYKNIEDDVSVVINKYWNNIEFIMKSMVSSLTSTEKITWTYIDRCL
VINIQNEIIYKILELKKTAYSIKSMINEELGFDLSVRFNLESKFDMNLEEYITKKDEETD
SLLSNRIVASPKSETNEKKNNDHKVEKEETDNIYGKSITDPIEIIKNVTPETGRVCIKGE
VFDVENRELKGGRTLLTISITDYTSSIKCKLFLRENNKDGVVDNISKGSYLKIRGNALFD
NYSQELIVNISDIQKSKKKEKHDKSDKKRVELHLHTQMSAMDAITSVSKVVERAAKWGHK
AIAVTDHGIVQAFPEAMDASKKHGVKVLYGVEGYLVDDTNPVIKNPNKLPLSQTFVVFDL
ETTGFSNKNDKITEIGAVKIENFEIVDRFSVLVNPEKPIPYKVQELTGITNDMVKDERTI
EQVLPDFLDFIDDSVLVAHNAEFDIGFIRENCKRMSLDFNNIYADTINLARELLPQLKRY
KLNTVAKALKVSLENHHRAVDDAEATAEIFIKFLEMLQEKDATHLHQVNELFKVADFKKV
RSNHITILVKNYIGLKNLYKLISKSHMEYFYKTPRIPKSVLKEYKEGLLIGSACENGEVY
QSILKNKENYEIEEVLELYDYLEIMPLDNNKFMIEKEIVKDYEELKDINREIIKLGKKYD
KLVVATGDVHFIDPHDEVYRKILKHSQGFKSANEEVPLYFRTTDNMLDEFSYLGDEVARE
VVITNTNKIADQIDEIKPIPDETCTPVIEGSEEDLREMCYKKAHSMYGEKLPDVVEKRLE
RELTSIISNGYAVLYIISQKLVAKSLQDGYLVGSRGSVGSSFVATTSDITEVNPLPAHYR
CEKCLKSEFFETGSYTSGADLPDKECPVCKIPYIKDGHDIPFEVFLGFEGDKEPDIDLNF
AGEYQPNAHKYTEVLFGEGYVYRAGTIGTIADKTAYGFAKKYIDENEMKTTSAEINRLSK
GCTGIKRTSGQHPGGVMVVPHYKEIYDFSPIQYPANDSTSGVVTTHFDYHSISGRILKLD
ILGHDVPTIIRMIEDITGINATRIPLDDKKTMSIFTSTEALGVTSEEINCTIGSLGIPEF
GTKFVRQMLTDTQPTTFGELVRISGLSHGTDVWLNNAQDLVRDGVVTLKDVISTRDDIMN
YLIFKGLKPKLSFKIMEKVRKGKGLTPEDEEEMKNNDVPQWYIDSCNKIKYMFPKAHAVA
YVMMSVRIAYCKVYYPHSFYATYFTTKAEDFDANLVIKGKDEVIRKMKEIESLGNDVTAK
EKGMLTVLEVVVEMFARKIEISRVDLYKSDAKKFRIVDNKLLPPLIALQGVGGNAAINIA
KEREKEEFLSIEDLRKRTKISKTVVETLKSHGCIEGLPETNQLSLL
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggatagtataaaaaaatatttagaaaaaataggagtgtataataaattagataagaaa
tatgataatgtgttattgagtaatatagtctattttaaagaagataagatcgtatatttt
tatttagaatcaaaagaaatactaaatatatctgagattagagatattgagagcaagata
aaaaatgaattaactttttttaatgatgtaaaatttagaataagatataagaatattgaa
gatgatgtaagtgttgttataaataaatattggaataatatagaatttataatgaagtct
atggtttcatctttaacatctactgaaaaaattacatggacatatatagatcgatgctta
gttataaatatacaaaatgaaataatatataaaatattggagttgaagaagactgcatat
tctataaaaagtatgataaatgaggaattaggttttgatttgagtgttagattcaatctt
gaaagtaaattcgatatgaatttagaagaatatataaccaagaaagacgaggaaacagat
agtttactttccaatagaatcgtagcgagtccaaaatctgaaacaaatgaaaagaaaaat
aatgatcataaggttgaaaaagaggaaacagataatatatatggtaaaagtattacagat
cctattgaaattattaaaaatgtaactcctgaaacaggaagggtatgtataaaaggagag
gtatttgatgtggagaatagagagttaaagggaggaagaactctattaactatttctata
acagattatacaagctctataaaatgtaaattatttttaagggaaaataataaggatggt
gtagtagacaatataagtaaaggatcttatttgaagattagagggaatgctttatttgat
aattattctcaggaacttattgtaaatatttctgatatacaaaaatcaaagaaaaaagaa
aaacatgataaaagtgataagaaaagggttgaactacatttgcatactcaaatgtctgct
atggatgcgataacctcagtatcaaaggttgttgaaagagccgctaaatggggacataag
gctatagcggttactgatcatgggatagttcaggcttttccagaggcaatggatgcatct
aaaaaacatggtgtcaaagttctttatggagttgaaggatatttagtagatgatactaat
cctgttataaaaaatccgaataaattgcctctaagtcaaacttttgtagtgtttgattta
gaaacaacaggtttttctaacaaaaatgataagataacagagattggtgctgtgaaaata
gaaaattttgaaatagtagatagatttagtgttttagtaaatcctgaaaaacctataccg
tataaagttcaggaacttacaggtataactaatgatatggttaaagatgaaagaactatt
gaacaggtgctgccagattttttagattttatagatgatagtgtgttggttgcccataat
gcagagtttgatataggttttataagagaaaattgtaagcgaatgtctttagattttaat
aatatatatgctgatactataaatcttgctagagagttacttcctcaacttaaaagatat
aaattaaatacagtagcaaaagctcttaaggtttctcttgaaaatcatcatagagcagtt
gatgatgctgaggctacagctgaaatatttataaagtttttggaaatgttacaagaaaaa
gatgcaactcatttacaccaagttaatgaattgtttaaagtagctgattttaaaaaagta
agaagtaatcatataactatattggttaaaaactatataggtcttaaaaatctatacaaa
ttaatatcaaaatcacatatggagtatttttacaagacacctaggatacctaaaagtgtt
ttaaaagaatataaggaaggacttttgataggatctgcatgtgaaaatggtgaagtgtat
caaagcatacttaaaaataaagaaaattatgaaatagaggaagtattagaactatatgat
tacctagagataatgccacttgataataataagtttatgatagaaaaagaaattgttaaa
gattatgaagaacttaaagatattaatagggaaattataaaacttggtaaaaaatatgat
aaattagttgtggcaacgggagatgttcactttatagatcctcatgatgaagtatataga
aaaatattaaaacattcacaaggatttaaaagtgctaatgaagaggttcccctttatttt
agaactacagataatatgttggatgaatttagttacttaggagatgaggtagctagggaa
gttgttataactaatacaaataaaatagcagatcaaatagatgaaataaaacctatacca
gatgaaacatgtactcctgtaatagaaggatctgaagaagaccttagagagatgtgttat
aaaaaggcccatagtatgtatggagaaaaacttcctgatgtagttgaaaagagacttgag
agagagttaacttctataataagtaatgggtatgcagttttatatataatatctcaaaaa
ctagttgcaaaatctttgcaagatggatatctagttggatcaaggggatctgttggttct
tcatttgttgctacgacaagtgatataacagaggttaatcctttgccagcacattataga
tgtgaaaaatgtttaaaatcggaattctttgaaactggaagttatacatcaggagctgat
ttaccagataaagagtgtcctgtttgcaaaataccttatataaaagatggacatgatata
cctttcgaagtgtttttaggatttgaaggagataaagaaccggatattgaccttaatttt
gcgggtgaatatcagcctaatgcacataagtatacagaagtactatttggggaaggatat
gtgtatagagctggaactataggaacgatagcagataaaacagcatatggatttgctaaa
aagtatattgacgaaaatgaaatgaaaactacatcagcagaaattaacagattatctaaa
gggtgcactggaatcaaaaggacatcagggcagcatccgggaggagtaatggttgttcct
cattataaagaaatatatgatttttctcctattcaatatccagctaatgattctacatct
ggagttgtaacaactcattttgattatcactctataagtggtaggatactaaagcttgat
atactaggacacgacgttccgactataataagaatgattgaggatataacaggaattaat
gctactagaatacctcttgatgataagaagacgatgtctatatttacatctacagaggct
ttaggagttactagtgaagaaatcaattgtactataggaagtcttggaatacctgagttt
ggaactaaatttgttagacaaatgcttacagatactcaacctacaacttttggagaactt
gttaggatatctggattatcacatggtacagatgtttggcttaacaatgctcaagactta
gttagggatggtgttgttacattaaaagatgttatatcaacaagagatgatataatgaat
tatcttatatttaaaggattgaagcctaagctttcatttaagataatggagaaggttaga
aaaggtaaaggcttaactccggaagatgaagaagaaatgaaaaataatgatgtgccacag
tggtatatagattcttgtaacaagattaagtatatgttcccaaaagcacatgcggtagct
tacgttatgatgtcagttagaatagcttattgtaaggtttattatccacattctttttat
gctacttattttactactaaagcggaagattttgatgctaatttagttataaaaggtaaa
gatgaagttattcgaaagatgaaagaaatagaaagtcttggaaatgatgttactgctaaa
gaaaaaggtatgttaactgtgcttgaggttgttgtagaaatgtttgcaagaaagatagaa
atttcaagagtagacctttataaatcagatgcaaagaaatttagaatagtagataataaa
ctattaccaccattaatagctcttcagggagttgggggtaatgctgctattaatattgct
aaagaaagagaaaaggaagaatttctttcaatagaagatttgagaaaaaggactaagatt
tcaaaaactgtagttgaaacattaaagagccatggctgtattgaaggcctacctgagacc
aatcaattatctctgctgtga
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