KEGG   Thiomicrorhabdus immobilis: THMIRHAM_14040
Entry
THMIRHAM_14040    CDS       T08420                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
tib  Thiomicrorhabdus immobilis
Pathway
tib00740  Riboflavin metabolism
tib01100  Metabolic pathways
tib01110  Biosynthesis of secondary metabolites
tib01240  Biosynthesis of cofactors
tib02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:tib00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    THMIRHAM_14040 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    THMIRHAM_14040 (ribD)
Enzymes [BR:tib01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     THMIRHAM_14040 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     THMIRHAM_14040 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: BCN93619
LinkDB
Position
complement(1560327..1561469)
AA seq 380 aa
MSATTSSDLRYMQQAIDLAKKGLYSTKPNPAVGCVLVKDGQVVGEGWHQRAGQPHAERVA
LAQAGVNAKGATAYVTLEPCSHFGRTPPCADGLIEAEVARVVVAMQDPNPMVAGQGIERI
RNAGIEVLVGVLEAEAKQINLGFIRKMEKQLPFVRLKMASSLDGRTAMENGESHWITGEE
SRLEVHRMRARCGALITGIGTVLADNPSLTVRLSDEELAKLNLTQDNCHPIRVVLDPNLS
MPLDAKMLGLPGRTILMTSRETAERSPEIVEAIDAKGVDMVAVAAEDDRLDIESILRYLA
EVEQINDVMVESGAIVAGAFIQSGLVNELHCFIAPSLMGNMAKPMFVLPGIETMADKINL
RIQSIDRFGDDARIVLALKD
NT seq 1143 nt   +upstreamnt  +downstreamnt
gtgtctgccacaacctcttccgatttgcgctatatgcagcaagctatcgatttggcgaaa
aaaggtttgtattcgaccaaaccgaatccggctgtcggatgtgtcttggtcaaagatgga
caggttgtgggagagggttggcatcagcgggcaggtcagcctcatgcggaaagggtggcg
cttgctcaagcaggtgttaatgccaaaggcgcaaccgcttatgtcactttagagccttgt
tcccattttggaagaacaccaccttgcgccgacggtttgattgaggctgaagtggctcgt
gtggttgtggcgatgcaagatcctaatcctatggtcgcggggcaaggcatagaacgcatt
agaaacgccggtattgaggtattggtcggagttttggaagcggaggctaaacaaattaat
ttagggtttattagaaagatggaaaagcagctaccttttgttagattgaaaatggccagt
agtttagatggccgtaccgccatggaaaatggcgaaagccactggattactggcgaagag
tctcgattagaggtgcatagaatgcgtgctcgttgtggcgccctcattaccggaattggg
accgtattggccgataacccgagtttaacggtgcgtttaagcgatgaagaactggctaag
ttaaatttaacccaagataattgtcatccaattcgggtggtgttggatcctaatttaagc
atgccgttagatgccaagatgttaggtttaccaggtaggacgattttaatgacttcgcgt
gaaaccgctgaacgcagtccggaaatcgtagaagcgattgatgctaaaggtgttgatatg
gtcgcggttgccgcagaggatgatcgtttggatatcgaatctattttgcgttatttggct
gaagtagagcagattaatgatgttatggttgagtcgggtgcgattgttgccggcgcattt
atacagtcgggcttggtgaatgagttgcactgttttattgctccttcattaatggggaat
atggctaaaccgatgtttgttctgcctggtattgaaacgatggccgataaaatcaattta
cgtatccaatccatcgatcgttttggtgatgatgctcgaatcgttttggcattaaaggac
tga

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