Thiorhodovibrio litoralis: Thiosp_04317
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Entry
Thiosp_04317 CDS
T09560
Symbol
polA_2
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03030
DNA replication
tlr03410
Base excision repair
tlr03420
Nucleotide excision repair
tlr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thiosp_04317 (polA_2)
03410 Base excision repair
Thiosp_04317 (polA_2)
03420 Nucleotide excision repair
Thiosp_04317 (polA_2)
03440 Homologous recombination
Thiosp_04317 (polA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlr03032
]
Thiosp_04317 (polA_2)
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_04317 (polA_2)
Enzymes [BR:
tlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Thiosp_04317 (polA_2)
DNA replication proteins [BR:
tlr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thiosp_04317 (polA_2)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Thiosp_04317 (polA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiosp_04317 (polA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WPL14471
LinkDB
All DBs
Position
4673666..4676635
Genome browser
AA seq
989 aa
AA seq
DB search
MPGSSKHKHYPGAGVILAAGLPDREASRGCPDRLHRAKLPFAHSYCPLPFAQANTMSDTY
DLVLLDASGYLFRAYHALPKLSNSRGEPTGALVGSLNMIRTLSERYQPRYLGVVFDPPGP
TFRNALFADYKANRPEMPDDLRVQIEPLQEIIRALGLPLLIVPEVEADDVIGTLATQAEQ
AGLRTLISTGDKDLAQLVNARIHLINTMSDKLLDPEGVREKFGVPPERIVDYLSLMGDSV
DNIPGVPKCGPKTAVKWLTQFGSLDDVIAHADDIGGKVGENLRASLEQLPLARELTTIKR
DLALDVAPEDLTPTAPDTDSLRTWYQRIESRRLLATLEAVAGGNASGVVAGGDEADATPR
DPSKGADGTSEANTEATTDQGVGTDAQSDYQTILTEADFTAWLERLQSAELFAFDTETTS
LDYMRAEVVGLSFAIAPGEAAYLPLAHIYPGVPTQLDRDRVLAAFKPLLEDPSRPKLGQN
LKYDMNVLAGHGIALQGVAHDSMLQSYVLDSTASRHDMDSLALKYLGHQCTTFSDIAGKG
AKQLRFDQIALEQATPYAAEDADITLQLHLSFWPRLEQTPSLKQLYQELEIPLIPVLSRM
ERHGVRIDADELAKQSRELAERISALEEKAYQTAGRRFNLGSPKQIGAIFFDELGLPVVS
RTPKGAPSTSEAVLEKLAEDGHELPHLILEHRGLSKLRSTYTDKLPQMRNPDTGRVHTSY
HQAVAATGRLSSSDPNLQNIPIRREEGRRIRRAFIPEPGHRLVAADYSQIELRIMAHLSG
DERLLAAFAEGQDIHRATAAEIHGLAPEDVTSDQRRSAKAINFGLIYGMSAFGLARQLGI
ERRDAQAYVDTYFARYPGVKDFMARIREQAARDHYVETIFGRRLYLPDINHSNQQRRQGA
ERTAINAPMQGSAADIIKRAMIAVDDWIERDRPPVRMIMQVHDELVFEIATDAVEDATAR
IRDLMQSAAKLKVPLIVDVGVGDNWDEAH
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgccgggcagctcgaagcacaagcactaccctggtgccggcgtgatcctggcagctggt
ctcccggaccgcgaagcatcccgcggctgccccgatcggctccatcgtgctaagttgccc
ttcgcgcactcttactgccctctcccctttgcccaagcgaataccatgtccgacacctac
gacctcgtgttactcgacgcttccggctacctgttccgtgcttatcacgccttgcccaag
ctcagcaattcccgcggcgagccgaccggcgcgttggtgggctcactgaatatgatccgc
accttaagcgagcgttatcaaccgcgctacctgggtgtggtgttcgacccgcccgggccg
accttccgcaacgcgctctttgccgactacaaggctaatcgcccggaaatgccggatgat
ctgcgcgtgcagatcgagcccttacaggagattatccgcgcactcgggctgccgctgctg
attgtgcccgaggtggaagccgacgatgtgatcggcaccctggccacccaggctgaacaa
gccggactgcgcacgctgatctcgaccggggataaggacctggcgcaactggtcaacgcg
cgcattcatctgatcaacaccatgagcgacaagctgctcgaccccgagggcgtgcgcgag
aagttcggcgtgccgcccgagcgtattgtcgattatcttagcctgatgggcgacagtgtc
gacaatattccaggcgtgcccaagtgcggccccaaaaccgcggtcaagtggctgacgcag
tttggctcgctcgatgatgtcatagcgcatgccgatgacatcggcggcaaggtcggcgaa
aacctgcgcgccagcctcgagcagctaccgctggcgcgggagctgaccaccatcaagcgc
gaccttgcccttgatgtcgcccccgaggacctcacaccgaccgcgccggacaccgacagc
ctgcggacctggtatcagcgcattgaatcgcgccgactgctggcgacccttgaggcggtg
gcggggggcaacgcctcgggcgtcgtggctggcggagatgaagcagacgccacgccacgc
gatccgagcaaaggcgcggatggcacgtccgaagcaaacaccgaagccacgaccgatcag
ggagtcggcactgacgcccaatccgattaccagaccatcctgaccgaagccgatttcacc
gcttggctagaacgtctgcagtccgccgagctctttgccttcgacaccgagaccacctcg
ctcgactacatgcgcgcggaggtcgtcggtctgtcctttgccattgcacctggtgaggcg
gcttatctgccgctcgcgcacatctatcccggcgttccaacacaactcgaccgcgaccgg
gtgctggccgccttcaaaccgctgctggaagaccccagccgccccaagctcgggcaaaat
ctcaagtacgatatgaacgtgctcgccggccatggcattgcgctccagggcgtcgcgcac
gacagcatgctgcaaagctatgtgctcgacagcaccgcaagccgtcatgatatggactcg
ctggcgcttaagtaccttggccaccagtgcaccaccttctcggacatcgccggcaagggc
gccaagcaactgcggtttgatcaaatcgcgctcgagcaggccacgccctatgctgccgaa
gatgccgacatcaccctgcagctacacctcagcttctggccccggctcgagcagacaccg
agcctcaagcagctgtaccaagaacttgaaattccgctgatcccggtgctctcgcgcatg
gagcgccacggcgtgcgcatcgatgccgatgagctcgccaaacaaagccgggaactggcc
gagcgcatcagcgcgctggaagagaaggcgtatcagaccgccgggcggcgcttcaatctc
ggctcgcccaagcagatcggcgccatcttcttcgacgagcttggcttgccggtggtctcg
cgcactcccaagggcgcgccctcgacctcagaagccgtgctggaaaaactcgccgaggac
ggccatgaactaccgcatctgatcctcgagcatcgcggcctgtcgaagctgcgctccacc
tacacagacaaactcccgcagatgcgcaatcccgacaccggccgggtgcacaccagctac
caccaggcggttgccgctaccggacgtctgtcctccagcgaccccaatctgcagaacatc
cccatccgtcgcgaagagggtcggcgcatccgtcgcgcctttatccccgagcccggccac
cgcttggtcgccgcggattattcgcagattgagctgcgcatcatggcgcacttatcgggc
gacgaacgcctgctcgccgcctttgccgaaggccaggacattcaccgcgccaccgcggcg
gaaatccacgggctagcgccggaggatgtcacatccgatcagcgccgctcggcaaaggcg
atcaacttcggccttatctacggcatgtccgcctttggactcgcacgccagcttggcatt
gagcgccgcgatgcccaagcctatgtggatacctactttgcccgttaccccggggtgaaa
gactttatggcgcgcatccgcgagcaggccgcgcgcgaccactatgtcgagacaatcttc
ggccgccggctctacctgccggacatcaaccacagcaatcagcagcgccgccagggtgcc
gagcgcaccgccatcaacgctcccatgcagggcagcgcggcggacatcatcaaacgcgcc
atgatcgccgtggatgactggatcgagcgagaccgaccgccggtgcgcatgatcatgcag
gtgcacgacgagctggtgtttgaaatcgccaccgatgcggtggaggatgcaaccgcccgc
atccgcgacctgatgcaatctgccgccaagctcaaggtgccgctgattgtcgatgtgggc
gtgggagacaactgggatgaggcgcactag
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