Tremella mesenterica: TREMEDRAFT_40446
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Entry
TREMEDRAFT_40446 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tms
Tremella mesenterica
Pathway
tms03020
RNA polymerase
tms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TREMEDRAFT_40446
09124 Replication and repair
03420 Nucleotide excision repair
TREMEDRAFT_40446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_40446
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_40446
Enzymes [BR:
tms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TREMEDRAFT_40446
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TREMEDRAFT_40446
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TREMEDRAFT_40446
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
ADD_DNMT3
Motif
Other DBs
NCBI-GeneID:
18493152
NCBI-ProteinID:
XP_007006723
JGI:
Treme1_40446
LinkDB
All DBs
Position
Unknown
AA seq
1808 aa
AA seq
DB search
MTITFPYSSAPTRQVKEIQFGVMSPEEIKAFSVAKIEHPEVMDENNRQKVGGLMDPRMGT
IDRNFKCQTCLEGMAECPGHFGHIELARPVFHGGFMVKVKKILECICFSCGKLRVDVRDP
MVANIVRRVKPQHRLKAIWAIASKRTSCETDERDDENGDATNEAEFQAEKELGVPKGHGG
CGADQPLWRKEALKLMAKSKPSTTDKDESGSELEIRSVSPGEIYNVLRKIPAEDLHVMGL
NIDYARPEWMILTVMPVPPAAVRPSISIDGGAMRSEDDLTYKLAQILKTSATVRRLEAEG
VPPSVVDEQFDLLQFHVATYMDNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRGNLMGK
RVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPSTYPGAR
YYVKDTGERIDLKYRKSGEPISLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLM
NYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMGI
VQDTLCGIRKFTLRDNYCDWKQVQNILLWLPGWDGTIPTPAILKPKPMWTGKQLMSMTIP
KGINITFKNNEKPSPIDITDENVLIDNGEIIHGTIVKNMAGSANNGLVHVIFRELGHVAA
RDFFSACQMMVNFWLLHYGFSVGIGDTIVDTATMAGITNRMVEAKEAVQRLIAEAEANRM
KPKPGMTIRETLEAGIATELNKARDWTGKTAQDNLKEDNNVKQMVVSGAKGSFINISQMT
GVVGQQFVEGKRINFGFKHRTLPHFPKDDYGPESRGFVENSYLRGLTPQEFWFHAMGGRE
GLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSTGDVVQFLYGEDGMDGAAMEKQS
FDIIRLSDRAFERRYKIDVFGGPGAGFGEKTLAPGIDKSSASLQNLLDDEYRQLREDRQL
LRQYIFPDGNPSHPLPANIQRIIQNSQQLFNVTVHTVSDLDPVHLIEMRKGLCDRLVIVR
GDDKFSKIHQHNATLLFNILVRSHLATRRILEEHHLTREAFEWVIGEIEQIFNKAVCDPA
EMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLD
REYSQTEKAAHQIMRKLTYTRLRDITASVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDI
KLEQHSPWLLRLELDRAKVLEGGYEMSQVVNAIVDTVGKDVFVIHSEDNAEKLIIRIRVV
SDEKEDDQLIGEEDIFLKKIEGTLLDHVELGGITGIQRVFISEGKQTVLSQQGEYDQERE
WFLETDGINLKEVLAVDGVDAVRTYSNNCYEVYQTLGIEAGRNALFKELNGVIEMGGSYV
NYRHLALLCDLMCSKGQLMSITRHGINRTDAGALSRASFEETVEILLEAAAVGDVDDCHG
VAENVLLGQIAPMGTGAFDVSLDLEMLKDVIVDHRLPVQNMMAAGVLSGGMTPGGAMTPY
DALSPMWNGQGSVGAAAFSPMQTSNNEESGGFNYMGYGMSPMQGGLSPGGGGGYSPSSPT
GYSPTSPFAITSPTYSPSSPYQGNAGSASPWIPRSSTNGGLNITSPAYSPSSPQYSPTSP
MYSPASPKFSPSSPTFSPSSPNYSPASPAYGGGGGGGLARNSPFSPASPAYSPTSPMGIT
SPRYSPTSPKYSPASPAFSPTSPVYSPTSPAPFQATSPRYSPNSPTFSPTSPVYSPTSPV
YSPASPAFSPTSPAYSPASPAYSPNSPAYSPTSPAAQGSNGQPQTNGQPARKGWGTSGGY
GTSPSWKG
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcacttttccgtattcctccgctcccacgcggcaggtcaaggagatccaattt
ggggtgatgagtccggaggagattaaagcattctccgtagccaaaatagagcatcccgaa
gtcatggacgagaataatcggcaaaaagttggaggactgatggacccgagaatgggcacc
atcgaccggaactttaaatgccagacttgtctcgagggcatggccgaatgtccaggtcat
ttcggtcacattgagcttgcacgacccgtgtttcatggcgggtttatggtcaaggtcaag
aagatcttagagtgtatctgtttcagttgtggcaaactgcgtgttgatgtgcgcgatcct
atggtcgctaacattgttcgtcgcgtgaaaccacaacatcggctaaaagctatttgggcc
atcgcctcgaagagaacgtcgtgtgagacggacgaacgggacgatgagaatggtgacgcc
accaacgaggcagagtttcaagcggagaaggagcttggcgttccgaaaggtcatggcggc
tgcggtgcagatcagcccctgtggagaaaagaagctctgaaactcatggccaagtccaaa
ccatccacgaccgacaaggacgaatctggcagcgagctcgagatccgctccgtctctcct
ggggagatatacaacgtccttcgaaagatccctgccgaagatcttcacgtcatgggtctg
aacatcgactacgcccggccagagtggatgatcctcaccgtcatgcctgtaccacccgcc
gctgtccgaccctctatctcaatagatggaggtgctatgcggagtgaagacgatttgact
tacaagcttgctcagatcctcaagacaagtgcgaccgttcgtcgactcgaagctgaaggt
gtaccacccagtgttgtcgacgaacaatttgatctgctgcagtttcacgtggcgacgtat
atggataatgagattgccggtctgccgcaggacatgcaaaagtctggaagacctatcaaa
gctatccgtgcgcgtttgaagggtaaagaagggaggatgcggggtaatttgatgggaaag
cgagttgacttttcggcccggacagtcatcaccggtgatccaaaccttcagctggatcag
gtcggagtgccgaaaagtatcgccatgacgttaacatatccggagagggtgacgccatac
aacatcgtctacttgcagacactcgtcaacaatggtccctcgacatacccaggcgcacgg
tactatgtcaaagataccggggagcggatagacttgaagtaccgcaagtccggtgaacca
atcagtcttcaattcggttggatcgtagagagacatctcaaggatggagattttgtacta
ttcaatcgacaaccgtctctgcacaagatgtctatgatgtgtcaccgtgtcaaattgatg
aactattccaccttccgtctgaacctctctgtaacgtcgccatacaacgccgatttcgat
ggtgacgagatgaacttgcatgtccctcaaagtgaggagacacgagcggagttgagtcag
attgcatgggtgcccagacagattatctccccgcaggccaacaaacccgtcatgggcatc
gtgcaagatacgttatgcggtatccgcaagttcactctccgcgacaattactgcgactgg
aaacaggttcagaatatccttctctggctgccgggctgggatggtacgatcccgacaccg
gctatcctcaaaccaaagcccatgtggaccggaaagcaactcatgtccatgacgattccc
aagggaatcaatatcacgttcaagaacaacgaaaagccctctcccatcgacatcaccgac
gagaatgtcctcatcgacaatggcgagatcatccacggcacgattgtcaagaacatggca
ggtagtgcgaacaacggattggtgcacgtcatatttcgagagttgggacatgtcgctgcg
agggacttcttttcagcttgtcagatgatggtcaatttctggttgttgcactacgggttc
agtgttgggatcggagatactatcgtggacacggctacgatggcaggaatcacaaatcga
atggtagaagcgaaagaggcggtccaacgactcatcgcagaggcagaggcgaatcgaatg
aagccaaaaccgggtatgaccatccgcgagacgctcgaagctggtattgcgaccgagttg
aacaaggctcgtgattggacgggtaaaacagcacaagacaacttgaaggaagacaacaac
gtcaaacagatggtggtatctggcgccaagggttcattcatcaacatctcccagatgacc
ggtgttgtcggacaacaattcgttgaaggaaagcgtatcaatttcgggttcaaacatcgt
actcttcctcatttccccaaagatgactacggtccggagtctagaggtttcgtcgagaac
tcttatcttcgcggtcttacgcctcaggagttttggttccacgcgatgggtggaagagaa
ggtttgatcgatactgccgtcaaaactgccgagaccggatacatacaacgacgactggtc
aaggcgatggaggatttgaaggtcgcatatgacgggacggtgcggaactcaactggggat
gtcgtccaattcctttatggtgaggatggtatggacggggcggctatggagaagcaaagt
ttcgacatcattcgtctatcagatcgagctttcgaacgtcgatacaaaattgacgtcttt
ggtggaccgggtgctgggttcggagagaagacgttggccccggggatcgacaaatcttct
gcgtctctacaaaacttgttggacgacgaatatcgtcaattgagggaagaccgtcaacta
cttcgacagtacatcttcccggacggtaatccaagtcacccgcttcccgccaacattcag
cggatcatccaaaactctcagcagctgttcaacgttactgtacatacggtcagtgacctc
gatcctgtacatctgatcgagatgcggaaaggcctttgcgaccgtttggtcattgtgcga
ggcgatgacaagtttagcaagatccatcagcataatgcaaccctcctgttcaacatcctc
gttcgatctcaccttgccacccgcagaatattggaggaacatcatcttactcgggaagcg
ttcgagtgggtgatcggggagatcgagcagatcttcaacaaagccgtctgtgaccctgct
gaaatggtggggacgcttgctgctcagtccatcggtgaacctgcgactcaaatgacgttg
aacaccttccactacgccggtgtcgcttcaaagtcagtcacaggtggcgtgcctcgattg
aaagagatcatcaatgtcgccgttaacatccgtacgccggcgttgaacgtgtatctggat
cgtgaatactcgcaaacggagaaggccgctcatcagatcatgcgaaaactcacatatact
cgattgagagatatcaccgccagtgtcgaaatcttttacgatcccaaattggacagcacg
gacattgaggaggataaagactttgtggatgctttctttgccatcccggacgaagacatc
aaattggaacaacattctccttggttgctccgtctagaactggaccgagcgaaggtgttg
gaaggagggtacgaaatgtctcaagtcgtcaatgccattgtcgacactgtaggtaaagat
gtattcgtcattcactcggaagacaatgcggagaaactcatcattcgtattcgagtggtt
tcggatgagaaagaagatgaccaattgatcggtgaagaagatattttcttgaagaagatt
gagggtactttgttagatcatgtcgaattgggtggtatcactggtattcaaagagtgttt
atatctgaaggcaagcaaactgttctttcacaacagggagagtatgatcaagaacgagaa
tggttccttgaaaccgacggtatcaatctgaaagaggtattggcggtggacggtgtcgat
gctgtgcgaacatattcgaacaattgttacgaagtttatcaaacgttgggtatcgaagct
ggtcgaaacgcattattcaaagaattaaacggtgtcatcgaaatgggaggttcatatgtc
aattatcgacatttagctcttctctgcgatctcatgtgttcaaagggtcaactcatgtca
ataactcgacacgggatcaatcgaacggatgctggtgctctttcccgagcttcattcgaa
gagactgttgagatcttactcgaagctgcagctgttggtgatgtggatgattgtcatggt
gttgccgaaaacgttttattaggtcaaattgcacctatgggtactggagctttcgacgtt
tctttggatttggaaatgctcaaagatgtaattgtggatcatcgtctacctgttcaaaat
atgatggctgcaggagttttaagtggaggaatgacacctggtggagccatgacaccatac
gacgcgttatcacccatgtggaatggtcaaggttctgttggagcagccgctttctcacca
atgcaaactagcaataacgaagaaagtggtggattcaattatatgggttatggaatgagt
ccaatgcaaggtggattatcacctggtggtggtggtggttattcaccttcttcaccaaca
ggatattcaccaacttcaccattcgcaattacatcaccaacatattcaccttcttcacca
tatcaaggaaatgcaggttcagcttcaccttggataccaagatcttcaactaatggtggt
ttgaatattacatcacctgcatattcaccttcttcaccacaatattcacctacatcacca
atgtattcacctgcatcaccaaaattttcaccttcttcacctactttttcaccttcttca
ccgaattattctccagcttcacctgcttatggtggtggtggtggtggtggtttagcgagg
aattcacctttttcacctgcttcacctgcttattcaccaacttcaccaatgggtatcaca
tctcctagatattcaccaacttcaccgaaatatagtcctgcaagtccggctttttcacct
accagtccggtatatagtccgactagtccagcacctttccaagctaccagtcctagatat
tcacctaacagtccgactttttctcccacatcaccagtttattcccctacttcacccgtt
tattcacctgccagtccagctttctctcccacctccccagcgtacagtccggcatcacca
gcttacagtcctaattccccagcttactcccccacttcacccgccgcccagggttccaac
ggtcagccacagacgaatggacaaccagcgaggaaaggttggggtacgtcaggaggttat
ggtacttcacccagttggaaaggttag
DBGET
integrated database retrieval system