Tremella mesenterica: TREMEDRAFT_45306
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Entry
TREMEDRAFT_45306 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tms
Tremella mesenterica
Pathway
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TREMEDRAFT_45306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_45306
Enzymes [BR:
tms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
TREMEDRAFT_45306
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TREMEDRAFT_45306
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_16
AAA_22
PduV-EutP
AAA_33
AAA_28
nSTAND3
AAA_24
Motif
Other DBs
NCBI-GeneID:
18493736
NCBI-ProteinID:
XP_007006741
JGI:
Treme1_45306
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MEYEALDIDPGVEWRFELEADEEMAVRVASGSVSINAEELPPSTWYPIHKLTKSAIYAHE
PAQIEVSSLPASHYASSSTNQSQILSLHLALEQRRILAKRVSDGTIGPRVMLVGPTSSGK
TTVAKNLVNLALSAGMGWTPCVVGLDPSSPANLIPGSISLSLPSHPLPTHHVAHPFGSSP
TSLPSSTLAADVSTVGWWYGHTEPSTKGSDIWKKLVSAMGERWKERCAKDPIAAASGLIM
DTPSAFTNPTLGTKKDDPKARYALVLQAIQTFDIDVIVVIGHEKLTIDLLRLLPSSIKVL
RLPKSGGVVDNDDTYRELVHAFQVRCYFYGEPPISKTIQALRGESVPRELGLTPYSFQIG
WETLIVLRVGEEHSAPSSALPLGSSRMLSPTRLTRVDPSGPAHTVRLLNTVLAIVAIRPD
DRIPKPTSVNKSAPTIIKSPKKEEGDDGEEEEKEEDDLDDVPYKEEVGWREVLGFVVITN
IDSQRRKYTLLSPTPGKLPSTVAIAGSVEWVDSE
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgaggctctcgacattgacccgggtgtggaatggaggtttgagctggaggct
gatgaggagatggctgtacgggtggcttccggctctgtctcaatcaatgcggaagaatta
cccccgtcaacttggtatccgattcataaactcaccaaatcggccatttacgcacacgaa
cccgctcaaatagaagtatcttcactacccgcgtcccattatgcctcatcatcgacgaac
cagtcacaaattctctcacttcatctcgctttggaacaaagacggattcttgctaaacgg
gtttcagacgggacaataggacccagagtcatgcttgtgggaccgaccagttcaggaaag
acgaccgtagcgaagaatttggtgaatctcgctttgagtgcagggatgggttggacgccg
tgcgtagtaggcttagatccttcttctcccgccaacctcatacccggttcgatatccctc
tccttaccttcacatccccttccaactcatcatgtggctcacccattcggttcctctcct
acttctctcccttcaagcaccctggctgcggatgtgtcgaccgtagggtggtggtatggc
cataccgagccctctaccaagggttcggatatatggaaaaagctcgtttcggctatgggt
gaaagatggaaagagcgttgtgccaaagaccccatcgccgctgcttcgggtttgataatg
gacacaccgagtgcattcacaaatcctactttgggaactaaaaaagatgatcctaaagct
cgatacgctttggtattgcaagctattcagacatttgacatcgatgtgatcgtcgttatc
ggacatgaaaaactcaccatcgaccttttacgtctccttccttcttccataaaagtcctg
cgtcttcccaaatcaggtggtgtggtggataatgatgacacttaccgcgaactggtgcat
gcctttcaagtcagatgttatttttatggtgaaccacctatctcaaagaccattcaggct
ctgagaggtgaatcagtccctagggaactgggcttaacgccttattccttccagataggg
tgggaaacattgattgttctgagggtcggggaggaacattcagccccttcctcagctctt
ccactcggttcaagtcgaatgctctcacctacccgtctcactcgtgtcgatccatccggt
ccggctcatactgtccgtttactcaacacagtcctcgctatcgtggctatacgtccagat
gatcgaataccaaaaccgacttccgtcaataaatccgccccgactattatcaaatcccca
aagaaagaagagggagatgatggggaagaggaagaaaaggaggaagatgatttagatgat
gtaccttataaagaagaagtaggatggagggaagtacttggttttgtggtgattaccaat
atagattctcaaagaaggaaatatactctgttatcccctactccgggtaagttaccaagt
actgttgctatcgctggttcggtcgaatgggtggattcggaatga
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