Tremella mesenterica: TREMEDRAFT_71846
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Entry
TREMEDRAFT_71846 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
tms
Tremella mesenterica
Pathway
tms03020
RNA polymerase
tms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TREMEDRAFT_71846
09124 Replication and repair
03420 Nucleotide excision repair
TREMEDRAFT_71846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_71846
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_71846
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_71846
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
TREMEDRAFT_71846
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TREMEDRAFT_71846
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TREMEDRAFT_71846
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
18498621
NCBI-ProteinID:
XP_007005539
JGI:
Treme1_71846
LinkDB
All DBs
Position
Unknown
AA seq
172 aa
AA seq
DB search
MFFLRELTHTILLHPSYFGSQLEEYLRQKLYEDVEGTCSGKYGYIISVITITSIGEGKVL
PGTGQARFKTTYTAIVMKPFKGEVVDGQVVNVNKMGFFAMVGPLQVFVSSHLVHADMKFD
PNASPPCYRSADEVIQKDSKVRMQIVGCRIEANDIFAIGTIKKDFLGQIRDD
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcctcagagaattgacacataccatcctacttcatccatcttatttcggatct
caattagaggaatatcttcgacaaaaactttatgaagatgttgaaggtacttgcagtggg
aaatatggatatataatctcagtgattaccataacttcgataggtgagggaaaagtactc
cctggaactggacaagctaggtttaaaactacttataccgctattgtgatgaaacctttc
aaaggtgaggttgtggatggtcaagttgtcaatgtcaataagatgggtttcttcgctatg
gtcggaccactccaagttttcgtttcctctcatctagtacatgcagatatgaaattcgat
ccgaatgcttccccaccatgttatcgttcagcagatgaggtaatacagaaagattcgaaa
gttaggatgcaaattgttggttgtcgaatagaagcgaatgatattttcgcaataggtact
atcaaaaaagatttcctgggtcagattagagacgattaa
DBGET
integrated database retrieval system