KEGG   Tremella mesenterica: TREMEDRAFT_71846
Entry
TREMEDRAFT_71846  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tms  Tremella mesenterica
Pathway
tms03020  RNA polymerase
tms03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TREMEDRAFT_71846
  09124 Replication and repair
   03420 Nucleotide excision repair
    TREMEDRAFT_71846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tms03021]
    TREMEDRAFT_71846
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_71846
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_71846
Transcription machinery [BR:tms03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     TREMEDRAFT_71846
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TREMEDRAFT_71846
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TREMEDRAFT_71846
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 18498621
NCBI-ProteinID: XP_007005539
JGI: Treme1_71846
LinkDB
Position
Unknown
AA seq 172 aa
MFFLRELTHTILLHPSYFGSQLEEYLRQKLYEDVEGTCSGKYGYIISVITITSIGEGKVL
PGTGQARFKTTYTAIVMKPFKGEVVDGQVVNVNKMGFFAMVGPLQVFVSSHLVHADMKFD
PNASPPCYRSADEVIQKDSKVRMQIVGCRIEANDIFAIGTIKKDFLGQIRDD
NT seq 519 nt   +upstreamnt  +downstreamnt
atgtttttcctcagagaattgacacataccatcctacttcatccatcttatttcggatct
caattagaggaatatcttcgacaaaaactttatgaagatgttgaaggtacttgcagtggg
aaatatggatatataatctcagtgattaccataacttcgataggtgagggaaaagtactc
cctggaactggacaagctaggtttaaaactacttataccgctattgtgatgaaacctttc
aaaggtgaggttgtggatggtcaagttgtcaatgtcaataagatgggtttcttcgctatg
gtcggaccactccaagttttcgtttcctctcatctagtacatgcagatatgaaattcgat
ccgaatgcttccccaccatgttatcgttcagcagatgaggtaatacagaaagattcgaaa
gttaggatgcaaattgttggttgtcgaatagaagcgaatgatattttcgcaataggtact
atcaaaaaagatttcctgggtcagattagagacgattaa

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