Thrips palmi (melon thrips): 117654212
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Entry
117654212 CDS
T08251
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03020
RNA polymerase
tpal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117654212
09124 Replication and repair
03420 Nucleotide excision repair
117654212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpal03021
]
117654212
03400 DNA repair and recombination proteins [BR:
tpal03400
]
117654212
Enzymes [BR:
tpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117654212
Transcription machinery [BR:
tpal03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117654212
DNA repair and recombination proteins [BR:
tpal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117654212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
EutB
Motif
Other DBs
NCBI-GeneID:
117654212
NCBI-ProteinID:
XP_034256359
UniProt:
A0A6P9AG83
LinkDB
All DBs
Position
Unknown
AA seq
1903 aa
AA seq
DB search
MATNDSKAPLRYVKRVQFGILSPDEIRRMSVTEGGIKFPETMEGGRPKLGGLMDPRQGVI
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPK
IKEVVMKSKGQPRKRLTFVYDLCKGKAICEGGDEMDINKDNPDDPSKEQPRKQGHGGCGR
YQPNLRRVGLDVTAEWKHVNEDSQEKKIALTAERVWEILKHITDEECFILGMDPKFARPD
WMIVTSLPVPPLCVRPAVVMYGSARNQDDLTHKLSDILKANNELIRNEQAGAATHVLAEN
IKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGER
IDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVR
KMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNLIRTH
STHPDEEDDGPYKWISPGDTKVMVEHGELVKGILCKKTLGTSAGSLLHVIFLELGHEVCG
QFYGNIQTVVNNWLLLEGHSIGIGDTIADRQTYAEIQNAIKKAKADVIEVIQKAHNMELE
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNL
STIKLANKAFERKFKFDPTNERNLRRIFNEDVMKELMGSGEVVSELEKEWEQLCKDRESL
RQIFPSGSNKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIRGVQELLTKCVIVAGE
DRLSKMANENATLLFQCLVRSTLCTKCVAEEFRLSSEAFEWLIGEIETRFQQAQCSPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLSGV
AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTK
ISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRIMNSDD
SKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHA
EVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNIGVGMGMGGGMLFGSAA
TPSSPQMTPWNQGATPMYGSVWSPHIDSGMTPAGITFSPSASSDASGMSPAYAWSPTPGS
PGSPGPSTSPYIPTSPAGASSPSYSPSSPAYAPTSPSMAASPNYSPTSPSYSPTSPNYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPT
SPSYSPSSPQYSPASPSYCPSSPKYSPTSPSYSPTSPSFPSSSPQYTPASPQYSPTSPTY
SPTSPSYSPTSPSYSPSSPQHTPGGAHYSPTSPKYSPTSPTYSPTSPQYSPSSSKYSPTS
PTYTPTSPNYSPTSPTFSPTAPGYSPTSPTYSPSSPAYEPESD
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacgattcgaaagcgccgttacgctatgtcaaaagagtacaattcggcatt
ctctctcccgatgagatccgacgtatgtcggtcacagagggagggattaaattccctgaa
actatggagggtggaaggccgaagttgggaggcctcatggaccctcgtcaaggtgtaatc
gacagatcatctcgatgtcagacatgtgcagggaatatgactgaatgccctgggcacttt
ggtcacattgatttagccaaacctgtctttcacattgggttcatcacaaaaactatcaag
atcttgagatgtgtatgcttctattgcagtaaactcctagttagtccgaacaaccccaaa
atcaaagaagttgtcatgaaatctaaaggacaaccaaggaaacgcttgacattcgtttat
gacttgtgcaaaggcaaagctatatgtgaaggtggtgatgaaatggacatcaataaagac
aatccagatgatccttccaaagaacagcctaggaagcaaggtcatggaggttgtggtcgt
taccagcctaacttgagaagagtggggttagacgtcacagctgaatggaaacatgtaaat
gaagactcacaggagaaaaaaatagctcttacagctgaaagagtgtgggagatcttgaag
catatcacagatgaggagtgcttcattctgggaatggatcctaagtttgccagacctgac
tggatgattgtaacttccctgcctgtgccaccactgtgtgtgcgacctgcagttgtcatg
tatggctctgcccgaaatcaggatgatttgactcacaaattatctgacattttgaaagca
aacaatgaattgatcagaaatgagcaggctggagctgcaacacatgttcttgctgaaaat
attaaaatgctccagtttcatgttgcaacattagttgataatgacatgcctggactgcca
cgagcaatgcaaaagagtgggaagcccctcaaagcaatcaaagctcgtctgaagggtaag
gaaggacggattcgtggcaacctcatgggaaaacgagttgacttttctgcccgtactgta
attactccagatccaaaccttagaattgatcaggttggagtccctcgttcaattgcacaa
aatctcacatttcctgaaatagtcacaccattcaacattgacaagatgcaagaattggtg
cgaagaggaaactctcaatatcctggtgccaaatacattgtcagagacaatggggaacgt
attgatctgcgtttccatcccaaaacatcagatttgcaccttcagtgtggatacaaagta
gaacgtcatattcgtgatggtgatttggtcattttcaaccgacagcctaccttacacaaa
atgtccatgatgggtcacagagtgaaagtattgccatggtcaacattccggatgaattta
agttgtacttctccttacaacgctgactttgatggagatgaaatgaacctacacgttcca
cagtccatggaaaccagagcggaagtggaaaatattcatgtaacccctagacagattatt
acccctcaggcaaaccaacctgtcatgggtattgtgcaggacactttaacagctgtccgg
aagatgacaaaaagagatgtattcttagaaaaggagcaaatgatgacactattgatgttc
ttgcctatttgggatggtaaaatgccacaaccatgtatcctaaagcccaagccactatgg
actggaaagcaagttttctctcttattattcctggtaatgtaaatctgatccgtactcat
tcaactcaccctgatgaggaagatgatggtccatacaaatggatctctcctggtgacaca
aaagtaatggtagagcatggagagctcgtcaaaggtatcctgtgcaaaaagacacttggt
acatctgcaggttctcttttgcacgtcatctttttggagttaggtcatgaagtctgtggt
cagttctatggtaatattcagaccgtagttaacaattggcttctccttgaaggccactct
attggtattggtgacactattgccgatcggcaaacatatgctgaaattcagaatgccatc
aagaaagctaaggctgatgtcatagaggtcattcaaaaggcacacaacatggagctggaa
ccaactcctggtaacacactcaggcaaacttttgaaaatcaggtcaatcgtatccttaac
gatgctcgtgataaaactggaggatctgctaagaaatctttaactgagtacaacaatttg
aaggctatggtggtttcaggatcaaaggggtccaacattaacatttctcaggttattgct
tgtgtgggtcagcagaacgttgagggtaaacgaattccttttggttttcgcaaaaggaca
ttgcctcacttcatcaaagacgattatggtcctgaatcgagaggcttcgttgaaaattca
taccttgctgggctgacaccctctgagttttacttccacgccatgggaggtcgagaaggt
ctcattgatacagctgtcaaaactgctgaaactggttatatccaacgtcgattgataaag
gctatggagtctgttatggttaactatgatggaactgtacgtaactctgttgggcagctc
attcagttgcgttatggtgaggacggtctttgtggagaaacagtagaattccagaacctc
tctactatcaaactggcaaacaaagcctttgagcgcaagttcaaatttgatcctaccaat
gaaagaaacttacgtagaatattcaatgaagatgtgatgaaagaactgatgggctctgga
gaagtagtgtctgaattggagaaagaatgggagcaattatgcaaagatcgtgagtcactc
agacaaattttccccagtggcagcaacaaagtcgtactgccttgcaatcttcaaagaatg
atttggaatgttcagaagattttccatatcaacaagagagcaccaactgatctcagtccg
ttaagggtcatacgtggtgttcaagagctgcttacaaaatgtgtcattgtagcaggagaa
gataggttaagcaaaatggccaatgagaatgccactcttttattccaatgtttggtgaga
tcaactctttgtaccaagtgtgttgcagaagagttcaggctgtcttcagaagcctttgaa
tggttgattggagaaattgagacaagattccaacaagcacagtgttcacctggtgaaatg
gttggtgctttggctgcacagtctcttggagagcctgccactcagatgacactgaacact
ttccactttgctggtgtgtcttccaagaacgtaaccctcggtgtgcctaggctgaaggaa
attattaacatcagtaagaagccaaaggccccgtctctaactgtcttcctctctggagta
gcagctcgagatgctgagaaggccaaaaacgtcctgtgccgtttggaacacaccactctt
cgtaaagttacagctaatactgctatttactatgatcctgaccctcagaacactgttatt
tctgaagatcaggaatttgttaatgtgtattatgaaatgcctgacttcgacccaacaaag
atctcaccatggcttctccgtattgaacttgacagaaagaggatgactgataagaagctt
actatggaacaaattgctgagaaaattaatgctggttttggtgaagatttgaactgcata
tttaatgatgacaatgctgagaagctggtacttcgtattcgtattatgaacagtgatgat
agtaaattccaagatgaagaagaacaagtagacaagatggaagatgatatgttcttgcga
tgcattgaagctaacatgctttcagacatgactcttcaaggaattgaagcaattggtaag
gtatacatgcatcttcctcaaacagatgctaaaaagaggattgtcatcactgaaactgga
gaattcaaggccattgctgagtggctccttgaaactgatggtactagcttgatgaaggtt
ctcagtgaaagagatgttgaccctgtgagaacattctccaacgacatttgtgaaatcttc
caagtacttggaatagaagctgtccgaaagtctgtagaaaaggaaatgaatgctgtgctt
cagttctatggactttacgtcaactaccgacatttggctttgctttgtgacgtaatgacg
gctaaaggtcatcttatggccatcactcgtcatggtatcaacagacaagatactggtgca
ctgatgagatgttcttttgaagaaactgtggatgtgttgatggatgctgcttctcatgct
gaggtggacccaatgagaggagtgtcagagaatattatcatgggacagttaccacgcatg
ggaacaggctgctttgatcttcttttggatgcagagaaatgtaaatatggtattgagatt
ccaatgaatattggagttggaatgggaatgggtggaggaatgttgtttggatctgcggct
acaccatcaagcccccagatgacaccatggaaccaaggagcaacacccatgtatggaagt
gtttggtctccacacatcgacagtggaatgacccctgctggtatcactttctctccgtct
gcttcgagcgatgccagtggtatgtcgccagcatatgcatggagcccaacacccggctca
ccgggctcacctgggccgtctacgagtccctacatccccacaagccctgctggagcaagc
tcaccaagttattctccatccagcccggcgtatgccccaacttctcccagcatggcggct
tcgcccaactacagcccgacatcgccttcctactcccctacttctcccaactacagcccc
acttcacctagttactcaccaacaagtccaagctatagcccaaccagtcctagctatagt
cccaccagtcctagctatagccctacaagtccttcatactctcccacaagtccctcatac
tctcctacaagtccctcatattctcccacaagcccatcatattctcccaccagtccttcc
tattccccgaccagtccatcttattccccaaccagtccaagctacagtcctaccagcccg
tcatactctccaacgagtccttcatattctcctactagtccaagctacagcccgacaagt
ccatcctattctcctagctcgcccaactacacccctgcttctccatcgtactctcctacg
tcaccgtcctactcgccgagctccccgcagtactctcccgcgagcccgagttactgcccg
tcgtctccaaagtactctcccacatcgccatcgtattcaccaacatctcccagtttcccc
agctcgtcgcctcaatacaccccggcgtcgcctcagtactctcctacctcaccgacttac
tctcctacttctccatcatattctcctacctctccttcttactctccaagctcaccgcag
cacacacctgggggtgctcactactcccccacatcaccaaaatattctccaacatctccc
acttactctcctacctcacctcagtactctccatcaagttccaaatattcacctacatca
cccacttacacaccaacttcacctaattattctccaacgtctcctaccttttctcctaca
gctccgggctattcacctacttctccaacttactcaccttcctctcctgcttatgaacca
gaatcagattaa
DBGET
integrated database retrieval system
