Trifolium pratense (red clover): 123887344
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Entry
123887344 CDS
T08949
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03020
RNA polymerase
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123887344
09124 Replication and repair
03420 Nucleotide excision repair
123887344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123887344
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123887344
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123887344
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123887344
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123887344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
123887344
NCBI-ProteinID:
XP_045792604
LinkDB
All DBs
Position
LG5:complement(3706988..3717538)
Genome browser
AA seq
1192 aa
AA seq
DB search
MNFEDEKEFDPAMLMDEDEEITQEDAWTVISSYFETNGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPSHQSDFAEMIYKIKFGQIYLSQPLMTESDGGTSPLFPKAARLRNL
TYSAPLYLDVSKSVIKKGHDGEEVTETQDFPKVFIGKVPIMLRSSYCTLYGKDENDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKQSQPNKYSFVAEVRSMAESQNRPPS
TMFVRMLSRASSKWGSAGQYIRVTLPYIRTEIPIFIVFRALGFVADKDILQHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGVTVGVTKEKRIKYAKGILQKEMLPHVDVEE
HCETKKAYYFGYVIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRRLFRKLTKDV
RGYVQKCVDNGKDVNLQFAIKAKTITDGLKYSLATGNWGLANAAGTRAGVSQVLNRLTFA
STLSHLRRVSCPKGRQGKLTKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AKYRIMQFLEDCGSENLEEISPARIAQATKVFVNGCWVGIHSNPDKLVERLRNLRRRVDV
NTEVGVVRDIRLSELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHELQQRESTEDSGWSGL
VSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLSYVLYYPQKPLVITRAMEHLHFRQL
PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLSFRSYRDEEKKMGTLVKEDFGRP
DRATTMGMTHGSYDKLDDDGLAPPGTRVSGADVIIGKTTPLSQEDAQGQAARYSRRDRSR
SLRHSETGVVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKFAAQMGKEGDATPFTDVTVDNISKSL
HKCGYQMRGFETMYHGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFMKERLFDQSDAYRVHVCEHCGLIAIANLKNTSF
ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKEIQSIKDHKKKAA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaagacgagaaagaatttgatcctgcaatgttgatggatgaagatgaagaa
ataactcaagaagatgcttggactgttatttcttcatactttgaaaccaatggtttagtt
cgtcaacaactcgattcattcgacgagttcatccaaaatacaatgcaggaaattgttgat
gaatctgctgatattgaaattcgacctgaatcacagcataatccaagtcaccaatcggat
ttcgctgagatgatttataagataaagtttgggcaaatttacttgagtcaaccgttgatg
actgaatctgatggaggaacttctcccttgtttcccaaggcagctaggttacggaatctt
acttattcagctcctttgtatcttgatgtttcgaagagtgttattaagaaaggacatgat
ggtgaggaagttactgagactcaggatttccccaaagttttcatcggcaaggttcctata
atgcttcggtctagttactgcacgctatatgggaaggatgagaatgatttgactgagctt
ggagagtgtccgtatgatcaaggaggatatttcattattaatggaagtgagaaggttctc
attgctcaagagaagatgagcaccaatcatgtctatgtgttcaagcagagtcagcctaat
aagtattcctttgtggctgaagttcggtccatggcagagtcccagaacagaccacctagc
accatgtttgtgcgcatgctatctcgagctagttccaaatggggttctgcaggacaatat
atacgtgttactcttccttacatccggaccgaaattcctatttttattgtgtttcgggca
ttgggatttgtcgctgacaaggatatactacaacatatatgctacgacttctcggatact
caaatgatggagttgcttcgtccttccttggaagaagcatttgtgatacaaaatcaacag
gttgcactcgactacattgggaaaagaggagtcactgtaggtgtaactaaggaaaagaga
attaagtatgctaagggcatccttcaaaaggagatgcttccacatgttgatgttgaagag
cattgcgagacaaaaaaagcgtactattttggatatgtcattcaccggctactactgtgt
gcacttgggcggagggctgaagatgatagggatcattatggaaacaagaggttagacctg
gcaggtcctttacttggtggtctctttagacggctattcagaaagttaactaaagatgtc
aggggttatgtacagaagtgtgttgataatgggaaggatgttaaccttcaatttgctatc
aaagcaaaaaccattactgatggacttaaatactcacttgctactggtaactgggggcta
gcaaatgctgcgggtactagagctggagtgtcacaggtgctaaatcgtttaacttttgca
tccactttatctcacttgcgaagagtaagttgtcccaaaggacgtcaagggaagttgacc
aaaccaagacaactgcataattcacaatggggaatgatgtgtccggcagaaacaccagaa
ggacaagcctgtggactggtgaagaatctagccttgatggtctacattacagttggttca
gcaaaatatcgtattatgcagtttttagaagattgtggttcagaaaatttggaggaaatt
tctcctgcgaggatagcccaagctacaaaagttttcgtaaatggttgctgggtgggcatt
catagtaaccctgataagttggttgaaagactcagaaatcttagacgtcgggttgatgtt
aataccgaagttggggttgttagagatatccgtcttagtgaactgcgcatatatacagat
tatggtcgctgcagtcgtcctttattcatcgtggataaacaaaggcttctcataaagaag
aaggacattcatgaattgcaacaaagggaatcaactgaagacagtggatggtctggtctt
gtgtccaagggctttatagaatatatcgacacagaggaggaagagactactatgatttcc
atgacaattaacgatcttgtacaagcaaggctcaacccagaagaagcgtattctgatact
tacactcactgtgaaatccatccatcactgattttgggtgtatgtgcttccatcatacca
tttcctgaccacaatcagtctcctcgtaatacgtatcagtctgcaatgggaaaacaagca
atgggaatatatgttaccaactatcagcttcgaatggataccttgtcctacgtattgtac
tatcctcaaaagccactggtcattacaagagccatggagcatcttcattttcgtcaactc
cctgctggaattaatgccattgtggccattgcatgttattctggttataatcaagaagat
tctgtcatcatgaaccaatcatcaatagaccgtggcttttttcggtctctgtctttccgt
tcatatagagatgaagagaagaaaatgggaacccttgtcaaagaagatttcggtcggccg
gatagagctaccaccatgggtatgacgcatggttcttatgataagttggatgatgatggt
cttgctccacctggcacaagagtgtctggtgcggatgttattattggaaagactactcct
ttatctcaggaagatgctcaaggacaagctgctcgttactcaagacgtgatcgcagcaga
agcttacgccacagcgaaactggagtggttgatcaagttctgttgacaacaaatgctgat
ggattgagattcgtgaaagtaagagtgagatctgttcgaataccacagattggtgacaaa
ttcagtagtagacatggtcagaaggggacagttggtatgacttatactcaagaagacatg
ccctggactgtggaaggcatcacccctgatattattgtcaatccacatgctataccttcc
cgaatgacaattggccagcttattgagtgtatcatgggcaagtttgcagcccaaatggga
aaagaaggagatgctactccttttacagatgttactgtggataatatcagcaaatctcta
cacaaatgtgggtaccaaatgcgtggttttgagacaatgtaccatggtcatacagggagg
cgtctcagtgcaatgattttccttggccctacctattaccaaagattgaagcatatggtt
gatgacaagatccattctcgcggacgaggtcctgtgcagattcttacaaggcaacctgct
gagggacgctcacgagatggaggtcttcgatttggagagatggaacgtgattgcatgata
gcccatggagctgctcacttcatgaaagaaagattgtttgatcaaagtgatgcatatagg
gtccatgtgtgcgaacactgtgggttgatagctattgcaaatttgaaaaatacttctttt
gaatgtaggggctgcaagaacaaaactgacattgttcaggtttacattccttatgcttgt
aagctgctcttccaagagctaatgtctatggccatagccccgagaatgcttactaaagag
atccagtctataaaagatcacaagaagaaagctgcctga
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