Trifolium pratense (red clover): 123908488
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Entry
123908488 CDS
T08949
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03020
RNA polymerase
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123908488
09124 Replication and repair
03420 Nucleotide excision repair
123908488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123908488
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123908488
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123908488
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123908488
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123908488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
123908488
NCBI-ProteinID:
XP_045815096
LinkDB
All DBs
Position
LG2:complement(41414614..41424456)
Genome browser
AA seq
1186 aa
AA seq
DB search
MDEDDEDDDDDEEITQEDAWAVISSYFQTKGLVRQQLDSFDEFIQNTMQEIVDESADIEI
RPESQHNPGHQPDFVETIYKISFGQIYLSKPMMTESDGGTSTLFPKAARLRNLTYSAPLY
VDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ
GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYSFVAEVRSMAESQNRPPSTMFVRML
SRAGSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLR
PSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVAEFCETKKA
YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLAGLFRGLFRKLTRDVRGYVQKC
VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLR
RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIQE
FLDEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRKLRRRVDVNTEVGVV
RDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHELQQRESAEESGWPDLVSKGFIE
YIDTEEEETTMISMTINDLVNSRLNPEESYSDTYTHCEIHPSLILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
VAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMG
MRHGSYDKLDDDGLAPPGSRVSGEDVIIGKTTPLSQEDAQGQASRYSRRDHSISLRHSEN
GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI
TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM
RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG
GLRFGEMERDCMIAHGAAHFMKERLFDQSDAYRVHVCELCGLIAIANLKKTSFECRGCKN
KTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVQAIKDQKKKAAL
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgacgaagatgatgatgatgatgaagaaatcactcaagaagatgcttgg
gctgttatttcatcctattttcaaaccaaaggtttggttcgtcaacaacttgattctttc
gatgaatttattcaaaacacaatgcaggaaatcgttgatgaatctgcagacattgaaatt
cgacctgaatcacagcataatccaggtcatcaacccgatttcgtcgagactatttataag
ataagttttggtcagatttacttgagtaaaccgatgatgactgaatctgatggaggaact
tctaccttgtttcccaaggcagctaggttaaggaatcttacttattcagctcctttgtat
gttgatgtttctaagagggttattaagaaaggacatgatggtgaagaagttactgaggct
caggatttcaccaaagttttcattggaaaggttcctatcatgcttcggtctagttattgc
acactatatcagaatagtgagaaggatttgactgagcttggagagtgtccgtatgatcaa
ggcggatatttcattattaatggaagtgagaaggttctcattgctcaagagaagatgagc
accaatcatgtctacgtcttcaagaagaggcagcctaataagtactcttttgtggctgaa
gttcggtccatggcagagagccagaacagaccacctagcaccatgtttgtgcgcatgcta
tctcgagctggttccaaagggggttcttcaggacaatatatacgggccactcttccttac
attcgaactgaaattcctattattattgtgtttcgcgcattgggatttgtcgctgacaag
gatatactagaacatatatgctatgacttctcggatactcaaatgatggagttgctccgt
ccttccttggaagaagcatttgtgatacaaaatcaacaggttgcactcgactacattggg
aaaagaggatccactgtaggtgtaaccaaggaaaagagaattaagtatgctaaggacatc
cttcaaaaggagatgcttccacatgttggtgttgccgagttttgcgagacaaaaaaagcg
tactattttggatatatcattcaccggctactactgtgtgcacttgggcggagagctgaa
gatgatagggatcattacggaaacaagaggctggacctggcaggtcctttacttgctggt
ctctttagagggctattcagaaagttaactcgagatgtcaggggttatgtacagaagtgt
gttgataatgggaaggatgttaaccttcaatttgctatcaaagcaaaaaccatcacgagt
ggacttaaatactcacttgctactggtaattgggggcaagcaaatgctgcgggtactaga
gctggagtgtcacaggtgctaaatcgtttaacttttgcatccactttatctcacttgcga
agattaaattctcccataggacgtgaagggaagttggccaaaccaagacagctgcataat
tcacaatggggaatgatgtgtccggcagaaacacccgaaggacaagcctgtggactggtg
aagaatctagccttgatggtctacattacagttggttcagcagcataccctattcaggag
tttttagatgagtggggtacagaaaactttgaggaaatttctcctgcggtgataccccaa
gctacaaaaattttcgtaaatggttgctgggtgggcattcatcgtgaccctgatatgttg
gttaaaacattgaggaagctgagacgtcgggttgatgttaataccgaagttggggttgtt
agagatatccgtcttaaagaactgcgcatatatacagattatggtcgctgcagtcgtcct
ttattcattgtggataaacaaaggcttctcataaagaagaaggacatccatgaattgcaa
caaagggaatcagctgaagagagtggatggcctgatcttgtgtccaagggctttattgaa
tatatcgacacagaagaggaagagactactatgatttccatgacaattaatgatcttgta
aattcaaggctcaatccagaagaatcgtattctgatacttacactcactgtgaaatccat
ccatcactgattttgggtgtgtgtgcttccatcataccatttcctgaccacaatcagtcc
cctcgtaatacatatcagtctgcaatgggaaagcaagcgatgggaatatatgttaccaac
tatcagcttcgaatggataccttggcctacgtattgtactatcctcaaaagccactggtc
actacaagagccatggagcatcttcattttcgtcaactccctgctggaattaatgccatt
gttgctatttcatgctattctggttataatcaagaagattctgtcatcatgaaccagtca
tcaatagaccgcggtttttttcgttctctgtttttccgttcatatagagatgaagagaag
aaaatgggaacccttgtcaaagaagatttcggccggcctgatagagcttccaccatgggt
atgaggcatggttcttatgataagttggatgatgatggtcttgctccacctggctcaaga
gtgtctggtgaggatgttatcattggaaagaccactcctttatctcaggaggatgctcaa
ggacaagcttctcgttactcaagacgtgatcacagcataagcttacgccacagtgaaaat
ggaatggttgatcaagttctgttgacaacaaatgctgatggattgagattcgtgaaagta
agagtgagatctgttcgaataccacagattggtgacaaattcagcagtagacatggtcag
aaggggacagttggtatgacttatacacaagaagacatgccctggactgtggaaggcatc
acccctgatattattgtcaatccacatgctataccttcccgaatgacaattggccagctt
attgagtgtatcatgggtaaggtagcagcccacatgggaaaagaaggagatgctactcct
tttacagatgttactgtggataatatcagcaaagctctacacaaatgtgggtaccaaatg
cgtggttttgagacaatgtacaatggtcatacagggaggcgtctcagtgcaatgatattc
cttggccctacctattaccaaagattgaagcatatggttgatgacaagatccattctcgt
ggacgaggtcctgtgcagattcttacaaggcaacctgctgaggggcgctcacgagatgga
ggtcttcgatttggagaaatggaacgtgattgcatgatagcccatggagctgctcacttc
atgaaggaaagattgtttgatcaaagtgatgcatatagggtccatgtgtgtgaactctgt
gggttgatagctattgcaaatttgaagaagacttcttttgaatgtaggggctgcaagaac
aaaactgacattgttcaggtttacattccttatgcttgtaagctgctcttccaagagcta
atggctatggccatagccccaagaatgcttactaaagaggtccaagctataaaagaccaa
aagaagaaagctgccttataa
DBGET
integrated database retrieval system
