Trifolium pratense (red clover): 123909490
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Entry
123909490 CDS
T08949
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03020
RNA polymerase
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123909490
09124 Replication and repair
03420 Nucleotide excision repair
123909490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123909490
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123909490
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123909490
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123909490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
123909490
NCBI-ProteinID:
XP_045816285
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All DBs
Position
LG2:39656085..39659371
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AA seq
320 aa
AA seq
DB search
MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV
TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIGKDHAK
WSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDPEAYS
YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLS
EDTVEADDQFGELGAHMRGG
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgcatcctacgcacgcatgccaagggtcaaaatccgtgagctcaaagacgat
tacatgaaattcgagcttcgcgacactgatgctagtgtagccaacgcgctccggcgcgtg
atgatttcagaagttccaaccgtcgccattgacctagttgaaatcgaggttaactcttcc
gttctgaacgacgagttcattgctcatagactcggtctaattccactcacaagtgaacgt
gctatgggcatgcgtttctcacgtgactgtgatgcttgtgatggtgatggacaatgtgag
tattgttctgttgagtttcatcttagggttaagtgtatgactgattctacacttgatgtt
actagtaaggatctttatagctctgatcatactgttgttcctgttgatttctctgctgct
gattcttcttctgttgaaacttctgatggcagggggattataattgtgaagttgaggaaa
ggtcaggagctgaggctgagagcaattgctaggaaggggattggtaaggatcatgccaaa
tggtctccagcagcaactgtcactttcatgtatgaaccagaaattcacatcaatgaggat
ttgatggaatctttgtcactggaggagaaaaaagagtggattgacagcagtccaacccgt
gtttttgacattgatcctgtcacacagcaggtactggtggttgaccctgaggcatacagt
tatgatgatgaggtgattaagaaagcggaagccatgggaaagcctgggcttgttgaaatc
aatgcaaagcaagatagcttcatattcacagtggaatctactggagcagttaaggcttct
caactgttgcagaatgccattgaaattctgaagcagaagctggatgctgtgaggctatct
gaagatacagtggaggctgatgatcagtttggtgagctaggtgcacatatgcgaggagga
tga
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