Trifolium pratense (red clover): 123922434
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Entry
123922434 CDS
T08949
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123922434
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
123922434
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
123922434
NCBI-ProteinID:
XP_045831107
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Position
LG4:complement(29533760..29536834)
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AA seq
397 aa
AA seq
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MNSQLSITTIALLLLLLLLLASNVTAQPGVFNIRKYGAPNGDITNALKSAWKDACASSSP
SKVVVPSGWYKLQQIDLEGPCNAPIEVRVHGKILAPKNPYHLNGQDQWVRFQYINFFTLS
GRGTFDGQGEMAWTQNDCGRNTNCNRHAMNFGFAFLNNSIIQDINSKDSKYFHANVFGCN
NVTFRNFNINAPETSPNTDGIHIGRSTKVQIINSKIGTGDDCISLGDGSRQITIRNVTCG
PGHGISVGSLGRYPNEEPVVDLTVKNCTLNNTDNGVRIKTWPGTSVVSIASHLHFEDIIM
VNVTNPIIIDQEYCPWNQCSKKSPSQIKIRKVLFKNIRGTSATQEGVALVCSRGVPCEAI
VLSDIDLSFNGSKAIAKCANVKPTIRRKAPICMVPHV
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtcaattgagtattaccacaatagctttgttgttgttattattattattatta
gcttccaatgtcactgctcaacctggagttttcaatataagaaaatatggtgcacctaat
ggagatataaccaatgctttgaagagtgcttggaaagatgcttgtgcatcatcaagtcca
agtaaagttgtggttcctagtggttggtacaagttgcaacaaatagatcttgaaggacca
tgtaatgctccaattgaggttcgagttcatggaaaaattctagcaccaaaaaatccttac
cacctcaatggacaagatcaatgggttagatttcaatatattaatttctttaccttatct
ggtagaggaacttttgatggccaaggtgaaatggcttggacgcaaaatgattgtggtaga
aatacaaattgcaataggcatgccatgaatttcggttttgcattcctcaacaattcaatt
atccaagacataaactcaaaagacagcaaatactttcacgccaatgttttcgggtgcaac
aatgtaacatttagaaatttcaacatcaatgcacctgaaactagtccaaacaccgatgga
attcacattggaagatcaactaaagtgcaaatcatcaactctaaaattggcactggtgat
gattgtatctctttaggagatggtagcagacaaatcacgattcgaaacgtgacatgtggt
ccgggacatggtattagtgttggaagtctaggaagatatccaaatgaagaacctgttgtg
gatcttactgtaaaaaattgcacactaaataacacagataatggtgtaaggatcaaaaca
tggcctggtacctcagtagtttctatcgcatctcatttgcattttgaagatatcataatg
gttaatgtcaccaacccgattattattgatcaagagtattgtccatggaaccagtgctca
aaaaagagtccatcacaaattaagataagaaaagtgctcttcaagaacattagaggaact
tctgcaacacaagaaggagtggctttggtttgtagtcgtggtgtgccatgtgaagctatt
gtacttagtgacatagatttaagtttcaatgggtctaaagcaattgctaaatgtgctaat
gtaaaacccacaattcgaagaaaagcacccatttgtatggttccacatgtatag
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