Thalassiosira pseudonana: THAPSDRAFT_168
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Entry
THAPSDRAFT_168 CDS
T01078
Symbol
RPB1
Name
(RefSeq) DNA directed RNA polymerase II, largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
tps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_168 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_168 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_168 (RPB1)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_168 (RPB1)
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THAPSDRAFT_168 (RPB1)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
THAPSDRAFT_168 (RPB1)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
THAPSDRAFT_168 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
7453440
NCBI-ProteinID:
XP_002286060
JGI:
168
UniProt:
B8BQ02
LinkDB
All DBs
Position
1:692424..697888
Genome browser
AA seq
1627 aa
AA seq
DB search
MAPRKDGTAREAGAISLSQASTNFGHSSARLRRIKKLQFGIINPEELRQYSVTQAITVNG
RKIPAGVTRYETYMSGQPVYGGVNDPRLGDLHDKSDPGYFGHIELARPVYHQGFIDVTLK
ALRCVCFHCSRITMEDTEYKFQRARQIRNRKRRLDAMHALIRPKKKCDHCNGYQPKYTKV
GLHVEIEYADEMERVPGSSGDKKQFMSAQKAVDIFKKMRDDEVKALGLDVTWARPEWMCV
SVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIVKSNIALKTAIQNGEPNIIVEQFEQA
LQHNVAAFVNNEMRGMPQITQRSGRPLKTLAQRLKAKEGRIRGNLMGKRVDFSARTVITA
DPNLGIHQVGVPRSVAMNLTVPTRVTPFNIQELSALVANGPTEHPGAKHIIRSDGLRIDL
RYVKNKSDLLLANGWIVERHLRDGDIVLFNRQPSLHKMSIMGHMAKVLDWSTFRLNLSCT
SPYNADFDGDEMNLHVPQSLPARAEAELMMHSPRVIVSGQSNRPVMGIVQDSLLAVQKMT
KRDVFVKKDLMMNILMWVEDWDGRIPPPAIYRPEELWTGKQIMSMILPKINLTGKANNGG
PGPNTFNAYDNLVRVMEGELIEGTIDKKTIGSGMGGLIHTAWLDVGHEDTARFMNQTQVV
TNYWVLQSSFSIGVCDTIADFATMEQIASTINKAKLQVLDLVRQGQRGELETQPGRTMIE
SFEQFVNKVLNTARDHAGKSAQASLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEG
NRIPYGFKRRTLPHFSKDDLGPESRGFVENSYLSGLTPQEFFFHAMGGREGLIDTACKTA
ETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIERQSFDSLTLNKRE
FDERYLLHSDDPDFGYDDQNIPFLEAEVIEDCRHNPEVQQMLDREMEVLKEDQAMLRIIM
ANREAGRESDVNSYAPGNVKRVIQNALRQFQIDKGLPSNLHPKDVIEKIEAMLRRLVVVV
GDDLLSVEAQNNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEARFHHAKVSPG
EMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQ
NHVSGDADVAKLVHSMIEYTVLTDLTKLTEIYYDPDPVNTIVAKDREFVKEYYEMGEETE
EDLRRLSPWVLRIELNQVVMVDKKIKMNEIAAEIANEYGSDLNVLVSDDNADDLVARIRI
VNDLPMVQGMDEDGNPIMTDDDVELGQEDDVFLKRLEKNMLHTLKLRGVDDVKKVFMRGG
AKKTVWDDEKGFGITDEWVLETDGTNLMSVLGIDYVDATRTISNDIVEVFMVLGIEGVRA
AILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMAVDRHGINRVESGPLLRCSFEETV
DMLNDAACFAEEEVLRGVTENIMMGQLARVGTGDMDLLLDEQKVLLWMDLRQTRNWGSWA
ALVCQHRMLPLHSRLLKCLHLLMLVDSVLRLGDSPLVHTATSGKLNDSWYIPRHALSSFF
VSNLLLRCPSLQTGIFSNSNKSCIFTNKPCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP
VSLLFVC
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atggcacccagaaaagacggcaccgcccgcgaagccggagccatctccctctcccaagca
tccaccaacttcggacactcctccgctcgtctccgtcgtatcaagaaattgcaatttggt
attattaatccggaggagttgaggcagtattcggtgacgcaggcgattacggtgaatggg
aggaagattccggcgggggttacgcggtatgagacctacatgtcaggacaacccgtttac
ggaggggtcaacgaccctcgtctcggtgatctccacgacaagtccgaccctggatacttt
ggtcacattgagcttgctcgtcctgtctatcatcaggggtttattgatgttactctcaag
gctttgaggtgtgtttgctttcactgtagtaggattacgatggaggatacggagtataag
tttcagagggcgaggcagattaggaataggaagaggaggctggatgcaatgcatgctcta
attcgccccaaaaagaagtgcgatcactgcaatgggtatcagccaaagtataccaaggtg
ggactgcacgtggaaattgagtatgctgatgagatggaacgagttccagggagtagtggg
gataagaagcaattcatgagtgctcaaaaggccgttgatatcttcaaaaagatgcgggat
gacgaggttaaagctcttggactcgacgttacttgggctcgtcctgagtggatgtgcgtc
tctgtgatgcccgtgcctcctcttcacgtccgtccctctgtcgtcatgggagggggtgct
caatcgtctgaggatgatctcacccatcagcttgtcaacattgtcaagtccaacattgct
ctcaaaactgctatccagaacggggaacccaacattatcgttgagcagtttgagcaggca
cttcagcacaacgtggctgcattcgtcaacaatgaaatgaggggaatgcctcaaatcact
cagaggagtggacgtcctctcaaaacgttggcacaaaggctcaaggccaaggagggacgt
attcgtggtaacttgatggggaagcgtgtggatttctcggctcgtactgtcattacggcg
gatcccaacctgggaattcatcaagtgggtgtgccgaggagtgttgccatgaacttgact
gtgccgactcgtgtgacaccgttcaacattcaagagttgagtgccttggtggccaacgga
cccacggagcacccaggagcaaagcacatcattcgcagtgacggattgcgtatcgacttg
cgatatgtcaagaataagagtgacttgctgttggcgaatggttggattgtggagcgtcac
ttgagggatggggatattgtgcttttcaatcgtcagccgagtcttcacaaaatgtccatc
atgggacacatggccaaagtgttggattggagtacctttcgtttgaacctcagttgtact
tcgccgtacaatgctgacttcgatggagatgagatgaacttgcacgttccacagagtttg
cctgctcgtgctgaggctgagttgatgatgcacagtcctcgagtgattgttagtgggcaa
tccaatcgtccagtgatgggtatcgtccaggattcgttgttggctgtgcagaagatgaca
aagcgcgatgtgttcgtgaagaaggatttgatgatgaacattctaatgtgggtggaagat
tgggatgggcgaatccctccaccagctatctacaggcccgaggaactttggacgggaaag
caaatcatgtcaatgattctacccaagataaacctcactggcaaggcgaataatggggga
cctggacccaacacattcaatgcatatgacaaccttgtcagagtaatggagggggagcta
attgaaggaacaatcgacaagaagaccattggatcaggaatggggggtctcatccacaca
gcatggcttgacgtggggcacgaggatacagctcgcttcatgaatcaaactcaggtggtc
accaactactgggtgttgcagagcagttttagtattggagtttgtgatacgatagctgac
tttgccaccatggagcagattgcgagtaccatcaacaaagccaaacttcaagtacttgat
ctcgttcgccagggtcaacgtggagagttggagactcagccaggacgaacaatgattgag
tcttttgagcagtttgtcaacaaagtcctcaatacagcacgtgatcacgcgggtaaatca
gcccaggccagtttggacgagactaacagtgttaaggccatggtgactgcaggttccaag
ggctccttcatcaacatctctcagattatcgcctgtgtcggacagcagaacgttgagggg
aaccgtatcccctacggatttaaacgtaggacgttgccccacttctccaaggatgatttg
ggacctgagtcgcgaggattcgtcgagaactcgtacctcagtggattgactcctcaagag
ttcttcttccatgcaatgggtggtcgtgagggtctgattgataccgcctgtaagacagcc
gagacgggttacatccaacgacgtcttgtgaaagcaatggagactgttatggcgaggtat
gacggtactttgcgtacatctggagggcagattgttcagtttctttatggagaggatggt
atggatgctgtctggattgaacgtcaatcctttgactcgctgactcttaacaagcgtgag
tttgatgaacgctacctactccattcggatgacccagactttggctatgacgatcagaac
attcctttccttgaggcagaggtgattgaagattgtcgtcacaaccccgaggtgcaacag
atgctggaccgtgagatggaagtgctgaaggaagatcaggcaatgcttcgtattatcatg
gccaatcgtgaggctggacgagagtcggatgtgaactcctacgcccccggtaacgtcaaa
cgtgtcattcaaaatgccctccgccagttccaaattgataaggggcttccttcaaacttg
catcccaaggatgtcattgaaaagattgaggcaatgctccgtcgtcttgtggtggtggtt
ggtgatgacttgttgagtgttgaagctcaaaacaatgcaacgacgctgtaccgtatcttg
attcgcagttatcttgcgagcaaacgtgttctcagggaataccgtttgagcgaggcggct
ttgatttgggtgcttggagagattgaggcacgattccatcacgccaaggtcagccctgga
gaaatggctggcgtccttgcagctcagagtattggggagccagccactcagatgacactg
aacacattccactacgccggagtgtccgcgaagaatgtaactttgggagtgcctcgtctg
aaggagattatcaacgttgccaaaacggtcaagactccaggtctaacgatctacttgcaa
aatcatgtcagtggcgatgcggatgtcgccaagttggtgcactccatgattgaatacacc
gtgcttactgatttgaccaaactgacagagatttactacgatccagaccctgtcaacacc
attgtcgccaaggatcgtgagtttgtcaaggaatactacgagatgggagaggagaccgaa
gaggatctccgacgtttgtcaccgtgggtccttcgcattgagttgaaccaagttgtgatg
gtggataagaagatcaaaatgaatgagattgcagcagagattgccaacgagtacggaagt
gacttgaatgtgcttgtttcggatgataacgctgatgatttggtggctcgcattcgcatt
gtcaacgatctacccatggtgcaaggaatggatgaagatggcaaccccatcatgacagac
gacgacgtggaacttggccaagaagatgatgtgttcttgaagcgattggagaagaacatg
cttcatactctaaagcttcgtggagtggatgacgtcaagaaggtcttcatgcgtggtgga
gcgaagaagacagtgtgggacgacgagaaaggcttcggaatcacagacgagtgggttctt
gagactgatggaacgaatctcatgtctgtgcttggtattgactacgttgacgcgactagg
acaatctctaatgacattgtggaggtgtttatggtgcttggtattgagggtgtacgtgct
gctattctcagtgagctgcgaaacgtcatttcttttgatggttcctacgtcaactatcgc
catctcgcttgtcttgtggacgtgatgacaatgcatggccacttgatggcagtggatcgt
cacggtattaaccgtgtcgagtctggtcccttgctgcgttgttcgttcgaagagacggtg
gacatgttgaacgatgcagcttgcttcgctgaagaggaggtccttagaggagttactgag
aacattatgatggggcagcttgctcgagttggtactggtgacatggacctgttgcttgat
gagcaaaaggttttgttgtggatggatttgagacagacaaggaattggggctcgtgggca
gcattggtatgccaacaccgtatgcttccactccattcgcgtctattgaaatgtctccat
ttgctgatgctggtggattcagtcctgcggttgggggattctcccctggttcatacggca
acatccggtaagttgaatgattcttggtatattcctcgtcatgcattatcttcattcttc
gtttctaatcttctgcttcgctgtccttcattgcaaacaggcatattctccaactccaac
aagtcctgcatattcaccaacaagccctgcctacagccctacgtcacctgcgtacagtcc
tacgatcctacgagtccagcatattctccaacgagtcctgcttactctcccaccagtcca
gtgagtctgttgtttgtgtgctag
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