Thalassiosira pseudonana: THAPSDRAFT_270357
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Entry
THAPSDRAFT_270357 CDS
T01078
Name
(RefSeq) predicted protein
KO
K06443
lycopene beta-cyclase [EC:
5.5.1.19
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps01100
Metabolic pathways
tps01110
Biosynthesis of secondary metabolites
Brite
Enzymes [BR:
tps01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.19 lycopene beta-cyclase
THAPSDRAFT_270357
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GFIT
Motif
Pfam:
Lycopene_cycl
FAD_binding_3
Trp_halogenase
CbiG_N
DUF4106
Motif
Other DBs
NCBI-GeneID:
7444681
NCBI-ProteinID:
XP_002287870
JGI:
270357
UniProt:
B8BUM8
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Position
2:complement(1230400..1232300)
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AA seq
597 aa
AA seq
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MVAVNPLHAVALAVLPSAAYAFVSPTPVVLSPSSARVTPLSGAPYCTSYRVRHSHSFPTT
SIQSRTTSSTIFASASNPTLTPTSQDTCDVLVLGSGPAARSIATLLSSKANDKAYDVLLA
DSNYDRRWAPNYGVWQDEWQSICKLYESFNQPIGNEVIDRLWMSTDCFFGGSFDIAAEQR
MRLDRPYCRIERDVLRRVLSPASECTSVNIYSPSGSMVHDESGTSVLIQSKDGDISQVRA
KLVVDCTGHESKIVLKDDRMKSIPPGFQIAYGILAEVDETSIPNNDFCGPYFKEAMTLFD
YRTDHFPEGSNELAKAEKAPTFMYAMPLNGNRIFFEETSLVARPALSFQECKDRCMTRLE
HLGITVTKVEEEEFCYIPMGGPLPAKDQRVIGFGGAAAMVHPSTGYHLCRAMMGAGEVAK
VIREELEEKNWNPDRAAARAYNAIWSPTTIAQRNFAVFGGEFLMKQNVVGLRGFFDGFFK
LPLGLWGGFLAGWPGLPNNENHETWWARLVFGLTFVSKLPVSVAVDMLGSIATYSISEGV
PLPQSVTPLLGLPDGYEYREKKSSIGDVAAKHEARRMIMESTVEEVVPVDFEEKTAA
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgtcaatcctctccacgctgtggcattagcagtgcttccatcggcggcatat
gcctttgtatctcctacaccagtcgtcctctccccgtcgtcggctagagtgacacccttg
tctggtgcaccttactgcacctcatatcgcgttcgtcattcccactccttcccgacaacg
tccatccaatctcgtaccacctcctctacaatctttgcatccgcgtccaacccaactctc
actccaacttctcaagatacatgcgatgttctcgtcctcggaagcggacctgcagcacga
tccatcgccaccctcctctcctccaaagcaaacgacaaagcatacgacgtacttctagca
gactcaaattacgatcgcagatgggctcctaactacggtgtttggcaagatgaatggcaa
tctatttgcaaactatatgaatcattcaatcagcccattggtaatgaagttattgatcgg
ttgtggatgtcgacggattgtttcttcggtggctcttttgacatcgctgcggagcaacgg
atgagattggataggccatattgcaggattgagagggatgtgctgagaagagtgttgagt
ccagcgagtgaatgcacgtctgtgaacatttattctccctctggatcaatggtacacgat
gaatctggaaccagtgttttgattcaatcaaaggatggtgatatttctcaagtacgtgca
aagctagttgtggattgtacgggacatgaatccaaaatcgtgttgaaggatgatcgtatg
aaatccattcctccaggctttcagattgcctacggtattctagcagaagttgacgagacg
agcataccaaacaatgatttctgcggtccgtacttcaaagaggcaatgactttgtttgat
tacagaaccgatcactttccggaaggttctaatgagttggctaaagcagaaaaggcaccg
acgttcatgtacgccatgccactcaatgggaatcgtatctttttcgaagagacatcgtta
gtggctagaccagcattatcattccaagaatgcaaagatcgatgcatgacacgtctcgag
cacttggggattactgttacaaaggttgaggaagaggagttttgctacattccaatggga
ggaccgttgccagccaaagaccaaagagttattggatttggaggtgcggctgcgatggtt
catcctagtactgggtaccacctgtgtcgagcaatgatgggagcaggagaagtagccaaa
gtgattcgtgaagagttggaagagaagaactggaacccagatagggcagctgcacgtgct
tacaatgcaatttggtcaccaacgaccattgcccaacgaaactttgcagtctttggaggt
gaattcttgatgaagcaaaacgtagtagggctgcgaggcttctttgatggcttcttcaag
cttcctcttggcttgtggggagggttcctcgctggatggcctggactgccaaacaatgag
aatcacgagacgtggtgggcacggttagtgtttgggttgacgtttgtttcaaagctaccc
gtgtctgtggcggtagatatgcttggatcgatagcaacatactccatttcagagggagta
ccactgcctcagtcggtgacaccgttattgggattgcctgatggatatgagtacagggaa
aagaagagttctataggtgatgttgcagcgaagcatgaggcaaggagaatgattatggag
tcgactgttgaggaagtagttcctgtagactttgaagaaaagacagcggcgtga
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