Thalassiosira pseudonana: THAPSDRAFT_28816
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Entry
THAPSDRAFT_28816 CDS
T01078
Symbol
RPC1
Name
(RefSeq) DNA directed RNA polymerase III, largest subunit
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_28816 (RPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_28816 (RPC1)
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THAPSDRAFT_28816 (RPC1)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
THAPSDRAFT_28816 (RPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
7444613
NCBI-ProteinID:
XP_002291242
JGI:
28816
UniProt:
B8C4M1
LinkDB
All DBs
Position
6:1840991..1845792
Genome browser
AA seq
1422 aa
AA seq
DB search
MAPDNGSHHGNTTERQLPLSHSSNQTLLPEANPTPKQISHLQFGLLSPSDMQRLAEFQVT
SRDLFTMPQRLPARNGVLDPRLGVSDKVSTCATCKLKLADCAGHFGYIRLALPVFHIGYL
KHTLNLLQCICKSCSRVLLTDAERKMLLKKMRNPRTDVLGKASVFKKVLDKCKKAHQCPY
CHKPNGTVKKVHGAPTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEINHALRVAVED
LLPTRVLELFKGMTDDDCEVLWVAPWIGRPENLILEHILVPPVPIRPSVAMDVGGGSNED
DLTVKLLEVINVNVALELNMTRNPQTKTIMEGWDVLQSQVAQYINGDMPGLKKEMGHKPI
RGLCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDQVGVPVHVAKIMTYPETVSR
YNIEKLRQRVLNGPDVHPGANLIRPGGENSFVKSLAYADRERAAQTLRIGDIVERHMEDG
DVVLFNRQPSLHKLSIMSHQVKVMPWRTFRFNICVCAPYNADFDGDEMNMHLPQTEEARI
EANMLMGVHHNLATPRNGEPLVACSQDFLSAAYLITQRDQFFSREMFCSLVSYFGLAEEQ
IDVPLPAILKPVPLWTGKQVFTCIVKPNKQTTALVNFEMKEKNYDTNKKLKHFCPNDGWV
AFRNSELISGNIAKKTIGDGSKTGLLYVLLRDCGSAEAARFMDRFSKLCSRYFGMHRGFS
IGISDVSPSAKLKKMKYDILSTGYKKAEEAIKKYDEGTLELRPGCDLLQSLEEILNGILG
KLREAAGQEAMKALPWSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGMRIQDGFVNRT
LPHFTYHSLTPPAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMARRLMK
ALEDLSLRYDNSVRNSENTVVQFTYGDDSLNPEKMENNDRPVEFDRLHLHISQIFPCVDE
PNLLKEQLQEKIEHCISEERFQCLLPKGKKFLAEIISFFEGIVELQDTIIGTCTNVEHIK
QRIWNSCRFTETQVNEFLKTALSKYTKAMVEPGEAVGAIGAQSISEPGTQMTLKTFHFAG
VSSMNVTLGVPRLKEIINASKNISTPIITAKLVQDDNKVGARIVKAGIEKTTLGEISIYV
KEVYSSGDCYLSILLDMDAIRQLRLNIDAVSVRRCILKGVRGQTRPPILRSLTDKHVLVK
KGSKSKLRVFVPDKGETPTYFLMQALKVALPRVIVQGISTVNRAVINEENKGGKTQYHLL
VEGYGLAEVMGSPGVDGRHTTTNHIIEVEQTLGVEAARTSISSEISYIMNAYGIGIDSRH
LLLLSDVMTFKGEVLGITRFGVAKMRESVLMLASFEKTTDHLLDAAVHGRTDAIDGVSEC
IIMGIPIPIGTGLFKLLKRATRASKPEPVPTVVSRGLLLGGG
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcacccgacaatggcagccatcatggcaacaccaccgaacgacagctcccactctcc
cacagctccaaccaaaccctcctccccgaagccaaccccactcccaaacaaatctcccat
cttcaattcggtctcctctccccctctgacatgcaacgtctcgccgagtttcaagtaacc
tctcgtgatttattcaccatgcctcaacgtctgcctgctcgaaacggagtgctcgaccct
cgtcttggcgtatccgacaaagtctcaacgtgtgccacgtgcaaactcaagttggctgac
tgtgcaggacactttggctacatccgtctcgccctcccggtatttcacattgggtatctc
aaacataccctcaatctccttcaatgcatttgcaaatcatgctctcgtgtcctgttgacg
gatgcagaacgtaagatgctattgaagaagatgaggaatccgcgtaccgatgtgttgggt
aaggcatcggtgtttaagaaggtgttggataaatgtaagaaggcacatcagtgtccatac
tgtcataagccaaacggtacggtgaagaaggtgcacggggcacctactttgaagattatc
cacgagaggtacaagggtcgtcatatggaggatgaagtggaggatttgcttcagtctctt
cagggagccatgattaccaatctagaaattaaccatgctctacgtgtggctgtggaagac
ttgctccccacccgcgtactcgagttgttcaagggcatgactgatgatgattgtgaggtg
ttatgggtagctccttggattggtcgtccagagaacttgatactggaacacattctagtg
cctcccgtgcctattcgtccgagtgttgctatggatgtggggggaggtagcaatgaggac
gatttaacggtcaagttgctggaggtgatcaatgtgaatgttgctttggagttgaacatg
acgaggaacccgcagacaaagacaattatggagggatgggacgtgttgcagagtcaagtg
gctcagtatatcaacggtgacatgcccggactgaagaaggagatggggcacaaacccata
agaggactgtgtcaacgattgaagggaaagcagggaaggttccgtggtaacttgagtgga
aagcgagtggactttagtgcaagaactgtgattagtcccgatcccaacttgcgggtggat
caagttggagttcccgttcacgttgccaaaatcatgacttaccccgagactgtctcaaga
tacaacattgaaaagttacgacagagggtgctcaacggaccggatgttcatccgggtgcc
aacctcattcgtcctgggggtgaaaactcctttgtgaaatcacttgcctatgctgatcga
gaacgtgcggctcagacgcttcgtatcggtgacatcgtagaacgtcacatggaggatggg
gatgtggtgctgttcaatcgccagccgtcgttgcacaagctgtccatcatgagtcatcaa
gtcaaggtgatgccttggaggacatttcgtttcaacatttgcgtgtgtgctccatacaat
gccgattttgatggagatgagatgaatatgcatcttcctcagacggaagaggcacgtatt
gaggcgaatatgctcatgggtgtgcatcacaatcttgctacacctcgtaatggcgagccg
ttggtggcttgtagtcaggatttcctctcagcggcatacttgattactcaacgtgatcag
ttcttttcgagggaaatgttttgctcgttggtatcgtactttggtttggcggaggagcag
atcgacgtaccattgccagcaattctaaagccggtgccgctgtggacggggaagcaggtg
tttacatgcattgtcaaacccaataagcaaactacggcactcgtcaactttgaaatgaag
gagaagaactatgacaccaacaaaaagttgaagcacttctgtcccaatgatggatgggta
gcattccgtaacagcgagttgatctcaggcaacattgcaaagaagactattggagacggg
agcaagactgggttactctatgtgttgcttagagactgtggatctgctgaggctgctcgt
ttcatggaccgcttctccaagctttgctcgcgttactttggtatgcatcgtggatttagc
attggtatttcggatgtatctccttcggcaaagttgaagaagatgaagtatgacattttg
agtactggttacaagaaggcggaggaagcaatcaagaaatatgatgaaggaacgttggag
cttcgccctggttgtgatttgcttcagtccttggaggagattctgaatgggatcctcggt
aaacttcgcgaggctgctggtcaagaagcgatgaaagcattgccttggtccaacactcca
cgtatcatggctgaatgtggatcaaagggtagtccgttgaatatttcccagatgatggca
tgtgtcggccaacaggccgtggggggtatgcgtattcaggatggatttgtcaacagaacg
ttgccgcacttcacgtatcatagcttgactcctcctgcaaaaggatttgttgccaactcg
ttctactctggattgacggcaaccgagtttatcttccataccatgggaggtcgtgaggga
ctggtagatactgctgtgaagacggcagaaacaggttacatggctcggcgattgatgaag
gcgctggaggatctctcactgcgatatgacaactctgtccgtaacagtgagaatacagtt
gtgcagttcacctacggcgacgactcgctcaatccggagaagatggagaacaatgatcgt
cctgtagagtttgatcgtctgcatctgcacatctcgcaaatctttccctgtgtagacgag
cctaatctattgaaggagcaactccaagaaaagattgagcattgcataagtgaagagcgt
ttccagtgccttcttccaaagggaaagaagttcttggcggaaatcatttccttctttgaa
ggtattgttgagctgcaggatacaatcatcggaacatgtaccaatgtcgaacacatcaaa
caacgaatttggaacagctgccgcttcaccgaaacacaggtcaacgaattcttgaagaca
gctctttcgaagtacaccaaagcaatggtcgaacctggagaggcagttggagccattggg
gcacagagtattagtgagcctggaactcaaatgactttgaagacatttcacttcgcggga
gtttcttcgatgaatgtgacgcttggggtacctcggttgaaagaaatcatcaacgcatcc
aagaacatatccactccgatcatcacggcgaagctcgtccaagatgataacaaggtagga
gcaaggattgtcaaggcgggcattgaaaagacgactctcggcgagatctccatctacgtt
aaggaagtctactccagtggtgattgttatctctctattctgttggatatggatgccatc
cggcaacttcggctcaacattgatgctgtatctgtccgtcgttgcatcttgaagggagtt
cgtggacagactcgccctcccatccttcgtagtctcactgacaaacacgtactagttaag
aagggttcaaagtcaaagctacgagtgtttgtgcctgacaaaggcgaaactcccacttat
ttccttatgcaagcactgaaggtagctcttcctcgagtcattgtccaaggaatttccact
gtcaatcgtgcggtaatcaacgaggagaacaagggaggaaagacgcagtaccatctcctc
gttgaggggtatggtctcgcggaggtgatgggaagtcctggtgttgatggacgacatacg
acaacaaatcatatcattgaggtggagcaaacactaggagtggaagctgcacgaacgtcc
atttcatccgagatctcgtacatcatgaatgcctatggtatcggtattgacagtcgtcac
ttgctgctgctgtctgacgtaatgacgttcaagggagaagtcctcggcatcactcgtttt
ggagttgccaagatgagggagagtgtgctcatgttagcatcctttgaaaagaccacggat
catctgttagatgcagctgtacatggtagaactgatgcaattgatggagtatcggaatgt
attattatgggaatccctattcccataggtaccggcttgttcaagttgttaaagagagct
acgcgtgcgtcaaagccagagcctgtgccgacggttgtgtcgagggggttgttgctgggt
gggggttag
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