Thalassiosira pseudonana: THAPSDRAFT_31193
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Entry
THAPSDRAFT_31193 CDS
T01078
Name
(RefSeq) predicted protein
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00240
Pyrimidine metabolism
tps01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
THAPSDRAFT_31193
Enzymes [BR:
tps01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
THAPSDRAFT_31193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
Motif
Other DBs
NCBI-GeneID:
7445644
NCBI-ProteinID:
XP_002286114
JGI:
31193
UniProt:
B8BQB6
LinkDB
All DBs
Position
1:972893..974034
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AA seq
296 aa
AA seq
DB search
VRLLPEVAEALRLGRPVVALESTIVAHGMPYPQNLELAKDVSQILRSKGVVPATIAIKDG
VFKAGLHPDEMINLAKAGEEGRAVKCSTRDLPLNVQWGATTVAATMRLAHSAGIATFVTG
GTGGVHRGGELSLDISTDLIELSRTPVVVVSAGVKSILDIRRTLEVLETFGVPTGTWQSD
EFPSFFSPTSGVQSPARFEDAMDVACAYLAGRDLGMTNGMLVCVPNHDPAGESVEAAIHE
ALLEAEAAGIEGRDITPFILRTVAEKTAGDSLRSNISLVKNNAAVGAEVASAISTM
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
gtacgtttgctaccggaggttgccgaggcgttgagacttggacggcctgttgttgcactt
gagagcaccattgttgctcacggaatgccgtatccgcagaaccttgagctagcaaaggat
gtttctcaaatccttcgaagcaagggcgtcgtccctgcgacaattgcaatcaaagatgga
gtgttcaaagcaggtcttcatcccgatgagatgataaacttggccaaggctggggaggaa
gggcgagcagtaaagtgctccacccgtgatttgcccttgaatgtacaatggggtgccacg
actgtggcagcgacaatgagactagcacactcagcaggcattgcaacctttgtcacggga
ggaacaggaggggtacacagaggaggagagctgtccctagacatatccactgatctgatt
gaattgtcccgaactcccgtggtagtggtatccgcgggtgtgaaatcgattcttgatatc
agaagaactttggaggtattggagacatttggagtacccactggaacgtggcaatcagat
gagtttccttcattcttctctcctacatcaggagtacagtctcctgctagatttgaagat
gcgatggacgtggcgtgtgcatatttagcgggaagagatcttggtatgacaaacggtatg
ctcgtatgcgtacccaatcatgatccagcgggagaaagtgtggaggcagcaattcacgaa
gcacttttagaagcagaagctgcgggaatagaaggcagggatatcacgccgttcatcctt
cgcactgttgctgaaaagactgcgggcgatagtctacgatcgaacatttcgctcgtcaag
aacaatgcagctgtaggtgcagaagtcgcatcagcaatatcaacaatg
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