Talaromyces rugulosus: TRUGW13939_09338
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Entry
TRUGW13939_09338 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TRUGW13939_09338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trg03021
]
TRUGW13939_09338
Enzymes [BR:
trg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TRUGW13939_09338
Transcription machinery [BR:
trg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
TRUGW13939_09338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Sda
Motif
Other DBs
NCBI-GeneID:
55996821
NCBI-ProteinID:
XP_035348354
LinkDB
All DBs
Position
V:complement(join(2286311..2287760,2287816..2288006,2288066..2290835,2290892..2291365,2291447..2291631))
Genome browser
AA seq
1689 aa
AA seq
DB search
MSSFARPVPSTLAAVDFSIYSSDDIKKISVKRIFNTPSLDSLNNPVPSSLYDPALGAWGD
HICTTCRASSWSCPGHPGHIELPVNVYNVTFFDQMFRLLRAKCDFCHRLRLPRTETNLYA
CKLRLLQHGLVEQVAEVDSIGEEGDEAIDADEDGHIDPQTKMERRNKFVKKCIREVQKQN
EQEGFYPEEKNAVATDRRRELIKEFMKDIAAAKKCATCHYISPGYRKDRYSKIFRKALPE
KAKMAMKMAGMTAPNPLIVLQEENKIFSKSKETEKPTANAIGKVTELHGAEEEVVRAHAA
AELAQGAKSSSQGDPEASQQFVPSPEVYAAICLLFERERDILNLVYSSRAGIKISPDMLF
IKSLLVPPNRFRPPAMQGGEIMEAQQNTPLTQILKTCDLINYISHQRQTAESVGAASREY
RDLLQAIVTLQEQVNGLIDSDRGPQSFAAVRSANGVKQLLEKKEGLFRKNMMGKRVNYAA
RSVISPDPSLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVMNGPDKYPGASAIENEW
GQVVNLKFKTLDERTALANQLLAPSNVKMKGNRNKKVYRHLTTGDYVVMNRQPTLHKPSM
MGHRARVLPNERVLRLPYPNTSSYNADYDGDEMNMHFPQNTLARAELSMIADADHQYISS
TDGKPLRGLIQDHITVSTFLTCRDTFFDKEEYQQLLYSCLRPENANTVTDRIQLVEPAML
RPRRLWTGKQVISTVLKNITPSNRRGLNLHGKSSTPGDRWGEDSEEGKVIFKDGELLCGI
LDKKQIGASGGGFIDAIHEIYGNTIAGSLLSILGRLLTRFLNMRAFSCGIEDLRLTPDGD
RKRRDILEKATALGRDVALKYVTLDQNPAPNQNAELQRRLEDVLRDDEKQSGLDSVFNSR
TKTLTSEITSECLPHGLVKQFPSNQMQLMTTTGAKGSGVNANLISCNLGQQVLEGRRVPL
MVSGKTLPSYKAFETHPQAGGYVCGRFLTGIKPQEYYFHTMAGREGLIDTAVKTAKSGYL
QRCLVKGMEAVKVEYDSSVRDTANGGSMIQFIYGEDGLDVGKQVHLQSFSFLAQNYVSAM
AQLNMTQDFHMLEKPEVSQWHKDAMKQVKKASKVAVKDPVLSVYHPGGHYGSVSEAFSKA
LKEYEDENPDQVLKDKKKNVSGVLSKKSFESVMLMKYLNSVIDPGDAVGIVASQSIGSQT
TQMTLNTFHLAGHSARNVTLGVPRLREIVMTASQKPTTPTMSVEVIQELSEEAGKSFAKG
ISRLSIAEVIDKLQVRESTTAGKDSTKAKIYDIKLAFFEAKEYAEEYAITKKDLLRALQD
EFLPKFIKLIKTELKRRQDEKDLKVYSAAQPDIGVSIGNSDSFDGTARPAETAGGGDDAD
DEDNEDDEDDAKRGQSGSNRNNQVSYEGPDDEEEEIRRAQIDSDSESDGDEGVGNAGSRK
KARRDDMDTADDEDELPEDMKADIRDAKMREEEVLDKYDEISSFKFDPKKGNSCSIRLEY
SIDTPKLLVLPLVEDAARRAVIQAVRGLGACLYTKADSAKGEPAHIDIEGVNLLAMRDYQ
GYINPHTIRTNSVYDMLLFYGVEAARSSIIREMSDVFTGHSITVDNRHLNLIGDVMTHSG
GFKAFSRNGLIKESNSPFSKSSFETSLGFMREAVLERDFDDFKSPSSRIVAGRLNVVGTG
AFDVLAPVA
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctttcgctcgtcctgtcccaagcacgcttgcggcagtcgacttttcaatctat
tcatcagatgatatcaagaagatatcagtcaagcgcattttcaacaccccctcgttggac
tctctgaataatcctgtgccatcttcattatacgatccagctctaggagcatggggtgac
catatttgcacaacttgccgcgcaagctcatggtcatgtccaggacatccaggtcacata
gaattgccagtaaatgtttacaatgtcacgttttttgatcaaatgtttcgcttgctacga
gcaaaatgtgatttctgccatcgactgcgtctgcctcgaacagagaccaacctctatgcc
tgtaaactccgacttttacagcatggcttagttgaacaggtcgcagaagttgattcaatc
ggagaagaaggagacgaagccatcgatgccgacgaggatggacatatcgacccccagaca
aagatggaaaggaggaacaaattcgtcaaaaaatgcattcgcgaagtccagaaacagaac
gaacaagaaggcttctatcccgaggaaaagaatgctgttgccacagaccggcggcgtgag
ttgatcaaggagtttatgaaagacatcgcagctgcgaagaagtgtgcgacctgccattac
atttctcctggttaccgtaaagatcgctactcgaaaattttccgaaaagctctgcctgag
aaagcaaagatggccatgaaaatggccggcatgaccgcccccaaccctctcatcgtgttg
caagaagaaaacaaaattttctctaagtccaaagaaacagagaagccaaccgccaacgcc
ataggcaaagtaacggaacttcatggagccgaggaagaagtagtgcgtgcccatgctgct
gctgaactagctcaaggtgccaaatcttccagccaaggcgaccccgaagcttcccagcag
tttgttccgtctccggaagtctatgcagccatctgccttctgtttgaacgagagcgtgat
attttgaacctcgtctatagctcccgcgcgggaatcaagatttcaccggacatgttgttt
atcaagagccttcttgttccgccaaacagattccgaccgcctgcaatgcaaggcggagaa
atcatggaggcccagcaaaatacaccattgacacagatcttgaagacctgtgatctgatt
aactacattagtcaccagaggcaaacggccgagtccgtcggcgctgcgtctcgggaatat
cgtgacctgctccaggcaattgtcacccttcaagaacaagtcaatgggctcattgatagt
gatcgtggtccccaaagttttgctgcagttcgttcagcaaacggtgtcaagcagcttctt
gaaaagaaagaaggtcttttcaggaagaacatgatgggaaagcgtgttaactacgccgcg
cgcagtgtcatctctcctgatcctagtcttgagactcacgaagttggcgttcctatggta
tttgcaaagaaattgacatttcccgagccagtcacgtctttcaacttccatgaactgagg
gaagctgtgatgaatggtccagacaaatacccaggagcttcagcaatcgaaaatgaatgg
ggccaagttgtgaacttgaaattcaagaccttggacgagcgtactgctcttgctaaccag
ctactggcaccatccaatgtcaaaatgaaaggcaatcgcaacaagaaggtttaccgtcat
cttaccactggtgactatgtcgttatgaaccgtcagccaacacttcacaaaccatccatg
atgggacaccgcgcacgtgtactgccgaatgaacgagtcctacggctgccttatccaaac
actagttcgtacaatgcagactacgacggtgatgagatgaatatgcatttcccacaaaac
acactagcacgagcggagctctccatgattgcagatgccgatcaccagtacatatcctct
accgacgggaagcctctcagaggtcttattcaagatcacatcacggtgtctacctttttg
acatgccgagatacattcttcgacaaagaagaatatcagcaacttctctatagctgtctg
cgacccgaaaatgccaacactgtcaccgaccgaatacagcttgttgagccagctatgcta
cgcccccgacgtctttggaccggaaaacaagtcatttctactgttctgaaaaatattacc
ccgtcaaatagacggggtctcaaccttcacggaaagtcatctactccgggcgatagatgg
ggagaggacagtgaagaaggcaaggtcattttcaaagatggagagctactttgcggtatc
ttggataaaaagcaaattggtgcatctggtggtggttttattgatgccatccatgagatc
tacggcaacactattgcaggtagcttgctgagtattcttggtcgactccttactaggttc
ctcaacatgcgagcctttagttgtggtatcgaggatcttcgattgacacccgacggtgat
cgtaaacgtcgggacatccttgagaaggctaccgcgctcggacgcgacgttgccttgaaa
tatgttacgctcgatcaaaatcctgcgcccaatcagaatgcggaacttcaacgtcgcttg
gaggatgttttgcgcgacgacgagaaacagtctggcctggacagtgtcttcaactctcgc
accaagacgcttacatccgagatcacatccgagtgtcttccgcatggccttgtaaaacaa
tttccctcgaatcaaatgcagctgatgacaacaaccggtgcgaaaggatcaggtgtcaat
gccaatttgatttcatgcaatcttggccagcaggttcttgaaggtcgccgtgtaccactt
atggtcagcggaaagactttgccgtcatacaaagcattcgagacccatccacaggctgga
ggctatgtctgcggacgcttcctgacgggtataaaacctcaagaatactacttccatacc
atggcaggacgtgagggtttgattgataccgccgtcaaaacagctaaatccggatacttg
caacgatgtcttgtcaagggtatggaggcggttaaggttgaatatgattcatctgtccga
gatacagccaatggagggtcaatgattcagttcatctatggagaagacggcctcgatgtt
ggaaagcaagttcatttacagagtttcagcttcttggctcaaaattacgtatctgcaatg
gcccagttgaacatgacgcaagacttccacatgctcgaaaaaccagaggtttcccaatgg
cataaagacgctatgaagcaagtcaaaaaggcgagtaaagtcgcagtcaaagaccctgtc
ttatctgtataccaccctggtggacattatggcagtgtctctgaggccttttcaaaggcg
ttgaaggagtatgaagacgaaaacccggaccaggtcctcaaggacaagaaaaagaatgtt
tccggtgttttgagcaagaaatctttcgaaagtgtcatgctcatgaaatacttgaatagc
gtcattgatcccggagatgctgtcggtatcgttgctagtcagtctattggctcgcagaca
acacagatgacattgaacacgttccacttggcaggtcacagtgctcgtaacgtcaccctt
ggtgtccctcgacttcgcgaaattgttatgactgctagccaaaagcctacaacgccaact
atgtcagttgaggtcattcaggagctgagcgaggaagctggaaagtcctttgcgaagggt
atcagtagactgagcatcgccgaggtcattgataagcttcaagtcagggaaagtacaact
gccggcaaagactcgacgaaggccaaaatttatgacattaaacttgcatttttcgaggca
aaggaatatgctgaagaatatgctatcaccaaaaaagaccttcttcgtgcactccaagac
gagtttttaccgaagttcataaagctaattaagaccgagttgaagaggcgtcaagacgag
aaggacctcaaggtttattctgccgcccaacctgacattggagtttcgattggcaacagc
gattctttcgatggcactgctcgcccggctgagacggcaggaggcggggatgatgcagat
gatgaggataatgaggatgacgaagatgacgctaaacgtggccagagtggcagcaaccgt
aacaaccaagtcagctacgaaggacctgatgatgaggaggaagagatcagaagagctcag
atcgactctgactcggaatccgatggtgacgagggcgttggtaacgcgggtagccgcaag
aaagctcgccgcgacgacatggatactgctgatgatgaggatgagctgcctgaagacatg
aaagccgacatcagagacgcaaaaatgcgcgaggaggaagttttagataagtacgacgaa
atcagttcattcaaattcgacccgaagaagggcaactcgtgctctattcgcttagaatat
tctatcgatacaccgaagcttttggttcttccgcttgttgaggatgcagctcgtcgtgca
gtgatccaggcagtccgtggtcttggcgcatgtctatacaccaaagctgattcagcaaag
ggggaacctgcacacatcgatatcgaaggtgtgaacttgctcgccatgcgtgattaccag
ggttacatcaacccacacaccatccgaaccaactcggtctacgatatgctcctgttctac
ggagtcgaggcggctcgctcctcaatcatccgtgaaatgtccgacgttttcactggtcac
agcatcactgtcgacaaccgccacctgaacctgattggtgatgtcatgacgcacagtggt
ggtttcaaggcttttagccgtaatgggctcattaaagaaagtaactctccgttctcaaag
agttcatttgagactagtttgggatttatgagagaagctgttcttgagcgtgactttgac
gatttcaagagccccagtagccggatcgtggctggtcgtctcaacgttgttggcacaggt
gcatttgatgtcctggctcctgtggcataa
DBGET
integrated database retrieval system
