Trichomycterus rosablanca: 134319593
Help
Entry
134319593 CDS
T09921
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134319593 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134319593 (polr1a)
Enzymes [BR:
trn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134319593 (polr1a)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
134319593 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
134319593
NCBI-ProteinID:
XP_062856932
LinkDB
All DBs
Position
8:38102970..38132181
Genome browser
AA seq
1691 aa
AA seq
DB search
MMLFSKETPWRRLEGMTFGMFSPEEIRKLSIKGITNPLLLDNVGNAAPNGLYDLSLGPAD
LKEICTTCMQDFNTCPGHFGHIDLHLPVYNPFLFDKLYMLIRGSCLSCHTLTCPRAAIHL
LVCQLKLLDVGAMKEVCELQVVLNQFLDDCPQASGTEIQEALEEFCSPIIKANQANQGCA
PIKNICEMKSSLIGEFWRVHMGSRKCPNCKASKSQVRREHNSKLIVTRAKPKDGAEEKED
DVYMGKRGYLTPSLGRDHIIKLWEKEGFFLKHLFSGLAVNCPKGFSPDMFFLEILMVPPC
RYRPINRLGDQMFTNGQTVNLQAVIKDNIIIQKLLALIAAEKAKEIEGTPTEPEEPVQTE
ETGVTDLTFLAGLVGVTLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKFPGIRQLLEKKE
GLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVL
NGPDVHPGASMVINEDGSRTILSRTNLTQREAIAKQLLTPSTGQHRMPMKIVNRHIKNGD
VLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARA
EAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYMELVYRGLTDKKG
RVKLLPPALIKPQRLWAGKQVVSTLLLNVIPEKHIPLNLTGKAKIPSKAWEKEPPRSVPG
YKPETMCESQVVIRHGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLSCLARLFT
AYLQLYRGFTMGVEDILVKPGANKRRKKIINESVNCGHKALGAAFNLPAAAGESEGRDLW
QNAHLNVDQRDYNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGST
VNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPQPRSGGFVTGRFLTGIKPPEFFF
HCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI
PKTQFLQSRQFPFIKENYEVIRKSQCLDEVLAKLDPNAAQSHFRAIRKWRAKHANVSPRD
GAFLLFSQKKLGQIMAESEGLSGESVNGRDNATLQLLDLWRTLNDSKRAKYLKKTSRCPD
PCLAVNRPDISFGSVSETFDSVTETYLSQYNIKQETYTAAELLDPERLRQLLQLKWQRAL
CEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKTPMM
SIPVLSSKKAVKRAKTLQKKLSRVCLSEVLRKVDVVETLRVEAKGQKKRIFTIMFQFLPP
ECYQQDKLLAPQRIVRFMEDRFFQLLLEAIKKLSAKLASINAVDTRKATSKDNDQEEGSS
NRQADEGEDESQVVDDEADEGDADASDAKRKEKQEEEVDYESDEGEESGYEEQEEGTEEA
EKELGSQGPSEESPGSSQTSKSETEDTQDSMRVNKVLQISSSIEGYKYDAQNGLWCEVTL
VLPVSKVHFDLTSLVVAQAQNAVIMETKGITRCLLNEVTNKQGIKELVLNTEGINMQEMF
KHGDILSLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMC
FEGVYKPLNRFGIQSNSSPLQQMTFETSYKFLKQATMLGLNDKLNSPSACLVVGKVVKGG
TGLFDLKQPLQ
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgatgttattttcgaaagaaacaccatggaggcgactggaaggcatgacgtttggcatg
ttctcgcccgaagagataagaaaattgagcatcaaaggtatcaccaatcctctgctcctg
gacaacgttggtaatgcggctcctaacggactctacgatctgtccctgggtccagcagac
ctgaaagaaatctgcacaacatgcatgcaagacttcaacacttgccccggacactttggt
cacattgatctgcacctgccagtctacaacccttttctgtttgataaactgtacatgctt
atccggggttcctgcctgtcgtgccacacgctgacgtgtccaagggccgccattcacctg
cttgtctgccagctgaaattattagacgtaggagcgatgaaagaagtctgtgaacttcag
gttgttcttaatcagtttttagacgactgtcctcaggcgtcaggaacagaaatccaagaa
gctttggaggaattttgttctcctatcatcaaagccaaccaagccaatcagggctgtgca
ccaattaaaaatatttgcgagatgaaaagcagcctcatcggtgaattctggagggtccac
atggggtcaagaaaatgtcccaactgcaaggcgagcaaatcacaagtacgccgagagcac
aacagcaaactaatcgtcacacgcgccaaacccaaagatggtgcagaggagaaagaagat
gacgtttacatgggaaaacgaggttatctaactccaagtctgggtcgagatcatatcatt
aagctttgggagaaagaaggtttctttttaaagcacttgttctcaggcctggcggtgaac
tgtcccaaaggtttcagtccggacatgttctttttagaaatactaatggtgcctccttgc
aggtataggccgattaatcgattaggggatcagatgttcactaacggacagacggtgaac
ctgcaggcggttatcaaagacaacatcattattcagaaactgttagccctgattgctgcc
gaaaaggcgaaggaaatagagggtactccgacagagccggaggagccagttcagacagaa
gagaccggagtgacagacctgacgtttttagccggcctggtcggagtcactcttacagat
aagctctataacacctggattcgcttgcagagtcacgtcaacattgtattcgacagcgat
atggacaaactgatgactgaaaagtttcctggcattcgtcagcttttggagaagaaggag
ggtttgtttagaaagcacatgatgggaaagcgtgtggactttgcagctcgatccgtcatc
tgccctgacatgtacatcggaaccaacgagatcggaatacccatggtgtttgccactaag
ctgacgtacccgcagcctgtgactccgtggaacgtgaaggagttacgccaggctgtcctg
aacgggcccgacgtccacccaggagcctctatggtcatcaacgaggacggctcacggacc
atcctcagccggaccaacttaacccagagagaagccatcgctaagcagctcctaacgccc
agcacaggccagcaccgcatgcccatgaagattgtaaatcgacacatcaaaaacggagac
gtgcttcttctgaaccgccagccgacgctgcacaggccgtccatccaggctcactgcgct
cgcatcctacctggagagaaggtgctccggctgcattatgctaactgcaaagcctacaac
gctgacttcgacggcgacgagatgaacgcgcactttcctcagagcgagctggcacgtgcc
gaggcttacacactcgtgagcacggatcagcagtacctcgtacccaaagacgggaagccc
ttggctggactgatccaggaccacatggtgtcgggcaccagcatgaccatccgtggctgc
tttttcacacgggatcagtacatggagctggtctatagaggtcttactgataaaaagggc
agggtcaagctgctcccccctgctcttattaaaccgcagaggctttgggctggcaaacag
gttgtatccacactattactgaatgtgattccggagaagcacatccctctgaacctgacc
ggaaaggccaagatccccagtaaggcctgggagaaggagcctcctcgatctgttccgggc
tataagcctgaaaccatgtgtgaatctcaggtggttattcgtcacggcgagctgctggtg
ggagtgctggataaagcccattatggaagttcagcgtatggactggtgcactgctgctat
gaactgtatggaggacagaccagtggcaagctgctcagctgtctggctcgactcttcacc
gcctacctgcagctctatcgcggttttaccatgggtgtggaagacattctggtgaaacct
ggagctaacaaacggcggaagaagatcatcaacgagtcggttaactgtggacacaaggca
ctcggggccgcctttaacctgcccgctgcagccggggagagtgaaggtcgagacctgtgg
cagaacgcccatctgaacgtagaccagcgcgactacaacatggtggacctcaaattcaaa
gaagaggtcaatcaggtcaacaacaacatcaacaaggtgtgcatgccattaggtctccat
cgttcatttccagagaataatctccagctgatggtgcagtcaggagctaaaggttccacc
gtcaatacaatgcagatttcatgtttgttgggccagatcgaattggagggccgtcgtcct
ccgctaatgccttctgggaaatctctgccgtgtttccaaccgtatgacccgcagcctcgt
tctggaggcttcgtgaccggcaggttcttgactgggatcaaacctcctgagttctttttt
cattgtatggctggtcgtgaaggtttggtggacactgctgttaaaacaagtcgttctggc
tacctgcagagatgtgtgataaagcatctggaaggcctggtggtgcagtatgacctgact
gtgagggacagcgatggcagcgtggtgcagttcctctacggtgaggacggcctggacatt
cccaaaactcagttcctacagtctcgccagttccctttcatcaaagagaactacgaggtt
atcagaaagtcccagtgcttggacgaagttctggctaaactcgacccaaacgcagctcaa
agtcactttagagccattagaaagtggagggccaaacatgcgaatgtgtcgcccagagat
ggtgccttcctgctcttctctcaaaagaaactgggacagataatggctgagagtgaagga
ctgtcgggagagtcggtcaacggtagagataatgctactctacagctgctggatttgtgg
agaactctgaacgacagcaagcgtgctaagtatctgaagaagacgtcacgctgtccagat
ccgtgcctggcagttaaccgtcccgacatcagttttggttccgtgtctgaaacgttcgac
tctgtaactgaaacctacctgagtcagtacaacatcaagcaggaaacgtacactgcggct
gaactgcttgacccggaaagattaaggcagctgttgcagctgaagtggcagagggcgctg
tgcgaaccaggagaagccgttgggttactagctgctcagagcatcggcgaaccctccact
cagatgaccctcaacacctttcactttgccggcagaggagaaatgaacgtcaccctggga
attcccaggttgcgagaaatcctcatgattgccagttccaacatcaagacccccatgatg
agcattcctgtattaagcagcaaaaaagccgtgaagcgagcgaagacgctgcagaagaag
ctttcccgcgtgtgtctgtctgaggtgttacgcaaggtggacgtggtggagacactccgg
gtggaggccaaaggccagaagaagcgcatattcaccatcatgttccagttccttcctcca
gagtgctaccagcaggataagttactcgcaccccagcgcatcgtccgcttcatggaggac
cggttcttccagttgctgcttgaggccatcaagaaactgagcgccaagctggcgtctata
aatgcagtggacactcgcaaggccacttcgaaggacaacgaccaggaggaaggttcctcc
aacagacaggcagacgagggtgaagacgagagccaggtagtggatgacgaggcggacgaa
ggggatgcagacgcctctgatgccaagagaaaggagaagcaagaagaggaggttgactat
gagagtgacgagggagaagaaagcggatatgaggaacaagaggaggggactgaggaagca
gagaaggaactgggatcacaggggccgtctgaggagagccctggatccagtcaaacctcc
aaatctgagaccgaagacacacaggactcgatgagggtcaacaaagttcttcagatcagt
tccagcatcgagggctacaaatatgacgcccagaacggcctgtggtgtgaggtgactctg
gtgctaccggtcagcaaagtgcactttgacctcacctcgcttgtggtggctcaggcccag
aacgcggtgatcatggagaccaaaggcatcacgcgctgcttactcaatgaagtgaccaac
aagcagggcatcaaggagctcgtcctgaacacagagggcatcaacatgcaggagatgttt
aagcatggagatattctcagcttgaatcgtctgtattctaacgagatccacgccatggcc
aacacatacggtatcgaagtggctttgagggtcattgagaaagagattaaagatgtgttc
gctgtttatggtatcgaggtcgacccccggcatctctctctcgtggcggactacatgtgc
tttgagggcgtgtacaagccccttaaccgatttggaattcagtccaacagctcccctctg
caacagatgacctttgagaccagctataagtttttgaaacaggccactatgctgggcttg
aatgataagttgaattcaccgtcagcttgcttggtggtgggaaaggttgtaaaaggagga
actggactgtttgatctgaagcagcccttacagtga
DBGET
integrated database retrieval system
