Trichomycterus rosablanca: 134322161
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Entry
134322161 CDS
T09921
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9 isoform X1
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn00310
Lysine degradation
trn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
134322161 (prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134322161 (prdm9)
03036 Chromosome and associated proteins [BR:
trn03036
]
134322161 (prdm9)
Enzymes [BR:
trn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
134322161 (prdm9)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
134322161 (prdm9)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
134322161 (prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
134322161 (prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
PRDM2_PR
zf-H2C2_2
zf-C2H2_4
SET
zf-H2C2_5
zf_PR_Knuckle
zf-C2H2_3rep
zf-C2H2_6
zf-met
TFIIF_alpha
zf-LYAR
Motif
Other DBs
NCBI-GeneID:
134322161
NCBI-ProteinID:
XP_062860101
LinkDB
All DBs
Position
10:complement(39521807..39529669)
Genome browser
AA seq
834 aa
AA seq
DB search
MSDGTGPPPGEDKNLEVPGAVTVCNLEIQEKSHQEDAFNDEHFYCEICRKQFIDQCDVHG
PPSFTPDTPTPLGVPQRALLTLPQGLVIGRSTTPEAGLGVFNQGQVIPVGMHFGPFDGEV
SGQEKAVESAHSWVVCRGRDQCDYIDAERDTHSNWMRYVVCSQNENDQNLVAIQQSGRVL
FRSRRPIYPGQELRVWYGEEYARDLSSTWDKIWDKKCACIGRSKEPASQVCLCPYCQYSF
PTAYYLHRHVRRSHPTEYPNLLETQSLELDEQAPAVDPDQCLLASDALSPSQMQPVSKST
GLADKSGEIDGSEAGETDETRNKCGDCGRAFLRACHLKRHQRTIHSKEKPYCCSRCRKCF
SQATGLKRHQRTHHEDGEKEPGETQPTGTGDAASNIYPCTECSFSFVTKLNLYKHLKRHH
HGEYLKVVEMDSSEMSQAEDKHDAPYEPPTKQRRSAPNPGADGGQNKRASTGRPRGRPPK
IKKKNAQKDQDGQSNGPESVQAPADPQTPAVPPEGDAGSEQPQETPPSSHVCGECLRTFS
QLHLLKSHECIQQGDGPHGCSHCELYFNRLCNLRRHERTIHAKERPYCCTLCLKSFTQSS
GLKRHQESHSRRRAHRQSTALASATIYACAHCPFSFTAERYLHKHIRRHHPEMSTKYLSF
AEGDVAPKEHSCTQCSKTFQTIRGFKNHACFRQGDQLYLCPDCGKAFNWFNSLKQHQRIH
TGVKPYACAQCEKSFVHSGQLNVHMRTHTGEKPFLCAECGESFRQSGDLRRHEQKHSGVR
PWQCPDCGKSFSRPQSLRAHQQLHKGTKLFPCTQCGKSFARRYHLTRHHQKMHS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacggtaccggaccgcctccgggtgaggacaagaatctggaggtacccggtgct
gtgacggtttgcaatctagaaatccaggaaaagagccaccaagaagatgcttttaatgat
gagcacttctactgcgagatctgccgtaaacagttcatcgatcagtgcgacgtccacggc
cctccgtcattcaccccggacacgcccacgcccctgggcgtcccccagagagcccttctt
acgctccctcaaggcttggtcatcggtcgatccacgactcccgaggccggtctgggggtt
ttcaaccagggccaggttattcctgttggaatgcatttcggacctttcgatggagaggtc
agcggtcaggagaaggccgtggagagcgctcattcctgggtggtgtgtcgaggacgcgac
cagtgtgattacattgatgcagagagggacactcactcaaactggatgaggtatgtggtc
tgttctcagaacgagaacgaccaaaatctggtggccatccagcagagcgggcgcgttctg
ttccgctcccgccgccccatctatcccgggcaggaactccgagtctggtacggagaagag
tacgcccgagatctcagcagcacctgggataagatctgggataagaagtgtgcatgtata
ggaaggagcaaggagccggcctcacaggtgtgcctctgcccctactgccagtactccttt
ccgacggcttattacctgcacagacacgtcaggcgctcccaccccaccgagtaccccaac
ctcctggaaacccagagcctcgaactcgacgagcaggcgccggcggtggacccggatcag
tgcctgctagcctccgacgccctgtctccatcccaaatgcagccggtctcgaaatccacc
ggcctggcggataaatcgggtgaaatcgacggttcagaggccggcgagacggacgagacg
aggaacaagtgcggggactgcgggagggcgttcctgcgcgcgtgccacctgaagaggcac
cagcgcaccatccactcgaaggagaagccgtactgctgcagccgctgcaggaaatgcttc
agccaggcgaccgggctcaagaggcatcagcggacccaccacgaggacggggagaaagaa
cccggcgagacccagccgacgggaaccggggacgccgcgtcgaacatctacccctgcacc
gagtgctcgttctccttcgtcaccaaactcaacctgtacaaacatctgaagaggcaccac
cacggcgagtacctgaaggtggtggagatggactcctccgagatgtcgcaggccgaggac
aaacacgacgcgccttatgaacccccgaccaagcagcgcaggtctgctccgaaccctggc
gcagacgggggtcagaacaagagagcgtccaccgggcgtccgcgaggcaggccgcccaaa
ataaagaagaaaaacgcccagaaagatcaggacgggcagagcaacggtccagagtccgtc
caggctcccgccgacccccagactccggccgttccaccagagggcgacgcaggaagcgag
cagccccaggagaccccgccctcctctcacgtgtgcggcgagtgcttgagaaccttcagc
cagctccatctcctgaaaagccacgagtgcatccagcagggcgacggtcctcacggctgc
tcccactgcgagctctacttcaaccgcctgtgtaacctgcggcggcacgagcgcaccatc
catgccaaggagcggccctactgctgcaccctgtgcctcaagtccttcacccagtcgtcc
ggcctgaagcgccaccaggagagccactcgcgccgcagggctcaccggcagagcacggcg
ctggccagcgccaccatctacgcctgcgcccactgcccgttctccttcacggccgagcgc
tacctgcacaagcacatccggcgccaccacccggagatgagcaccaagtacctgagcttc
gccgagggcgacgtggcgcccaaagagcacagctgcacccagtgctccaagactttccag
accatccgcggcttcaagaaccacgcctgcttccgccagggggaccagctgtacctgtgc
cccgactgcggcaaggccttcaactggttcaacagcctgaagcagcaccagcgcattcac
acgggagtgaaaccgtacgcctgcgcgcagtgcgagaagagcttcgtgcactcggggcag
ctgaacgtgcacatgcgcacgcacaccggggagaagcccttcctgtgtgccgagtgcgga
gagagcttcaggcagtccggcgacctccggcggcacgagcagaagcactcgggcgtccgg
ccctggcagtgccccgactgcgggaagagtttcagccggccgcagagcctcagggcgcac
cagcagctccacaagggcaccaaactgtttccgtgcacacagtgcgggaaaagcttcgcc
cgccgctaccatctcacccggcaccaccagaagatgcactcctga
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