Trichomycterus rosablanca: 134330106
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Entry
134330106 CDS
T09921
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04020
Calcium signaling pathway
trn04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
134330106 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
134330106 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
trn04040
]
134330106 (grin1a)
Ion channels [BR:
trn04040
]
Ligand-gated channels
Glutamate (ionotropic)
134330106 (grin1a)
BRITE hierarchy
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
134330106
NCBI-ProteinID:
XP_062867133
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Position
16:complement(2457671..2491875)
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AA seq
901 aa
AA seq
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MRLFMIFILVSCSCARGGCEPKIVNIGAVLSQKRYEQVFKDAVNQANLVYGRERFKLNAI
SVTHKSNAIQMALSVCEDLISSQVYAILVSHPPQSSDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKILQFNQETNLTALLMEAKELEARVIILSA
SEDDAAAVYKTARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHISD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSIFNYQKSRLVQVGIYNGTQVVLNKQRKIIWPGGETERPRGFQMSTRLKIVT
IHQEPFVYVKPTTLEGTCREEFTPNGVLIKKVICTGPNETIPGRPTVPQCCYGFCIDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
AAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQQYPPTDITGQLNLSDPSVSTV
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttatgattttcatcctggtgtcatgttcgtgcgcacggggaggctgcgag
cccaaaattgtgaacatcggtgcggtgctgagccagaagcgctacgagcaggtgtttaaa
gatgcggtgaaccaggccaacctggtctacgggagagaacggttcaaactcaatgccatc
tctgttacacacaaatccaacgctattcagatggcactgtctgtctgtgaggacctcatc
tccagccaggtctacgcaattttggtaagtcacccaccgcagtccagtgaccacctcact
cctacaccggtctcctacactgcaggattctaccgtatacccgtggtcggcctcaccacc
cgcatgtccatctactctgataagagtatccatctttccttcctgcgcactgtgcctccg
tactcgcaccaggcacacgtgtggttcgacatgatgcgcgagttccgctggaaccacatc
attttaatagtcagcgacgaccacgaaggcagagcagctcagaagagactggagacactt
ctggaggaacgagagaccaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggccgagaaaatcctccagttcaaccaggagacaaac
ttaaccgccctgctgatggaggccaaagagctggaggctcgggtgatcattctgtctgcc
agtgaagatgatgctgcagccgtctacaagacagctcgttttctcaatatgaccggctcc
gggtacgtctggctggtcggagagcgggagatgtccggtaaagccctgagtgaagctcca
gatgggctaatcggcctccagctcataaacggtaagaacgaatcggctcatatcagtgat
gcggtggcggttgtggctcagtccatccaggagctttttgaaaaggaaaacatcactgag
ccgcctcggggctgcgtgggcaacaccaacatctggaagaccgggccactatttaaaaga
gttctgatgtcatccaaatatccagaaggcttgacaggaagggtggagttcaatgatgat
ggagacaggaagtacgcccattacagcatcttcaactaccagaagagcaggctggtccaa
gttggcatttataatggaacgcaggtggtgctgaacaaacagaggaagatcatctggcct
ggaggggaaacagagagacccagaggtttccagatgtccacaagattaaaaatagtgacc
atccatcaggagccttttgtgtacgtgaaaccgaccacgctggaggggacctgcagagag
gagttcacaccaaacggagtcttgattaaaaaggtcatctgtactggaccaaacgagacc
attccaggacgcccaacggtgcctcagtgctgttatggattctgcattgacctgctgatc
aagctggccatgactatgaacttcacttatgaggtccacctggtggctgatgggaaattt
gggacacaggaaagagtaaacaacagcaacaagaaggagtggaacggcatgatgggagag
ctcctgggtggcctcgcagacatgattgttgctccactgaccataaacaatgaacgagct
cagtacattgaattctccaagccgtttaaataccagggactcaccatcctggtcaaaaag
gaaatacctcgaagtaccctggactcgttcatgcagcccttccagagcacgctatggctg
ctggtgggtctgtcggtgcatgtggtggcggtgatgctatacctactagaccggttcagt
cccttcggaaggtttaaagtaaacagtgaagaggaagaagaagacgctctcacgttatct
tcagcgatgtggttctcctggggagtgttgctgaactctggtattggagaaggtgcacca
cgcagcttttcggcaagaatcctgggcatggtgtgggccggctttgctatgatcattgtg
gcatcttacactgccaacctggctgccttcctggtgttggatcggcctgaggaacgcatc
accggcatcaatgatccaaggttgaggaacccatcagacaagttcatctatgccacggtg
aagcagagctcagtggatatctacttccgacgccaggtcgagttgagcaccatgtatcgc
cacatggagaagcacaactatgagagcgccgctgaggccatccaggctgtccgggacaac
aagctgcatgctttcatctgggactctgcggtgctggagtttgaagcctcgcagaagtgc
gacctggtgaccacgggagagctgtttttccgatcgggctttggcataggcatgcgcaag
gacagcccctggaaacagaatgtgtccctggctattctcagttcccatgagaacggcttc
atggaggacctggataaaacctgggtgagataccaggagtgtgactcaaggagcaatgcc
ccagccacactcacctttgagaacatggcaggtgtgttcatgcttgtcgctggaggcatc
gcagcagggatcttcctcatctttatcgagattgcatacaaacgacataaagacgcccgc
aggaagcagatgcagctagcctttgcggcggtgaacgtctggaggaagaacctgcagcag
tacccacccacagacatcacgggccagctcaacctgtccgacccgtctgtcagcactgtg
gtgtga
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