Trichomycterus rosablanca: 134331417
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Entry
134331417 CDS
T09921
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
134331417 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
trn04090
]
134331417 (vcam1b)
04091 Lectins [BR:
trn04091
]
134331417 (vcam1b)
CD molecules [BR:
trn04090
]
Proteins
134331417 (vcam1b)
Lectins [BR:
trn04091
]
I-type lectins (Siglecs)
134331417 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C1-set
ICAM1_3_5_D2
ICAM_N
Adhes-Ig_like
Receptor_2B4
Motif
Other DBs
NCBI-GeneID:
134331417
NCBI-ProteinID:
XP_062868889
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Position
17:complement(3600778..3614408)
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AA seq
820 aa
AA seq
DB search
MVPELRFVLTVLLPLFSCHTAASSIKLELSPKKALFQIGDRGELTCQMDHCSEEIKFSWG
ALMDKPHYGEAHFYPTKSTLVFSSVAKKHENIIKCMAKCKDVATQASVAVRVYSFPKDPV
ITGHDQLVPGQENTLTCKVSDIYPAEYMEVNWLRGDKVVETKEGKPDMESIQSDYTFTPQ
SDDDGQQITCRASLALSGLASEKSSRETNVSMVLLAAPHNVRVSEPRSVAVGSSLSLRCE
ADGNPKPVFTWRFIGPAGRSVVVGETETLSLSDVTLSDSGRYECEASNKLGREMVSVNVT
VQGPPVNTVISVSPSKPKENELITILCVSDSNPKSRLVLSKVLDGNQTELVSELGPEVSV
IHHHARVGDSGLYVCEAINEYGSQNTSIHVNVETHPLEVSIQPNGSVIPVTRGFSMTLFC
QASGCPHPQMIWSEVKHLPSHTWDSNQTTVSQLGPWTVELDDDQAFICEVKCGSVIKSKR
AELKVLSFPSEPTIESSGPYLDGKVTNLTCAVSEVYPADRFHIQWLDGETELQSVRGSFS
NELEVISSTRSYQLDSRIQNKTITCKVSLEMDGVLMEKKASTTLTVHYAPRQTVIIVTPQ
EQKEGEPMSISCLTDSFPTGQVILSRVLDGEKTELVSGAESQISFTIPSAKLSDSGTYVC
EAANEYGHQKDSVQLTVQAPPRNTTVSIYPSAHVQEGQNITICCHSVSFPPPAIMLRKLD
SDVDIYSPDGTFLLINLTPNDTGLYQVNVTNSLGYETEVFRIHVMETHSSPFPSSTYFVI
PAIGLGVLASVVGMLEYLRRAMRKGSYDLTESKPRPAQTV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggttcctgagctcagatttgttctgactgttcttctgcctctgttctcctgtcacaca
gcagcttcatccatcaaactggagcttagtccgaagaaagctctctttcagataggggac
aggggggagctgacgtgccaaatggatcattgctccgaggagattaagttctcatggggg
gcactgatggacaaaccccactatggtgaagctcacttttaccccacaaaatctactctg
gtcttctccagcgtggccaaaaaacatgaaaacataatcaagtgcatggcaaaatgcaag
gatgtggccacacaagcttctgtagcagtcagagtgtactcttttccaaaggacccagtt
atcacaggacacgaccagctggtaccaggacaggagaatactttgacctgcaaggtttct
gacatctatccggcagagtacatggaagtgaattggctgcggggagataaggtggttgaa
acaaaagagggaaaacctgacatggagtccattcagtccgattatacattcacaccacaa
agtgacgacgacgggcagcagattacgtgccgagcctcactcgcgctcagcggattagca
tcagaaaagagcagcagggagaccaacgtgtccatggttttactcgctgcacctcacaat
gtacgagtatcagaacccagatcggttgcggtcggctccagtctctcactgagatgtgag
gcggatggaaatccgaagcctgtgtttacatggaggttcatcggtcctgctgggcgctcg
gtcgtagtgggagagactgaaactctttctctgtctgacgtgactttgtctgattctggg
aggtatgaatgtgaggccagcaacaaactgggaagagagatggtcagtgtcaacgttact
gttcagggtcctcctgtgaacacagtgatctctgtttctccctccaagccaaaggaaaat
gagttgataacgatcctctgtgtgagtgacagcaatccgaagagccgtctggtcctgagc
aaagtgctggatgggaaccagacagagctggtatctgaacttggacctgaagtctctgta
attcaccaccatgccagagtcggtgactccggcctgtatgtgtgtgaagccattaatgag
tacgggagtcagaataccagcattcacgttaatgtagaaactcatcctctggaggtttcc
attcagcccaatggaagtgtgatcccagtgacgcgaggtttctcaatgactctcttctgc
caggcttcaggctgtcctcaccctcagatgatttggtcagaggttaaacatttaccatca
cacacatgggacagtaatcagacaactgtatctcagcttggaccgtggactgtggagctg
gacgatgaccaagctttcatctgtgaggttaaatgtggatctgtgataaagtccaagcgt
gcagagctgaaggttttatccttcccttcagagcccaccatagagagttctggaccttat
ctggacggaaaagtgaccaacctgacctgcgctgttagtgaagtgtacccagcagaccgt
ttccatatacagtggctggatggggagacggagctacagtcggtccgcggctccttctca
aacgaactggaagtcataagctcgactcggagctatcaactggacagcaggatccaaaat
aagacaatcacctgtaaggtctcactggaaatggatggtgtattgatggaaaagaaagca
tctactactctgactgtgcactatgcccccagacaaaccgtgattattgtaacccctcag
gagcagaaggaaggggaaccgatgagcatctcctgcctgactgacagttttccaacagga
caagtgatcttaagcagggtgctggatggagaaaagacagagctggtgtctggtgcagag
tctcaaatctcctttaccattccctctgcaaagctgtcagactctggcacctatgtatgt
gaagctgccaatgaatatggacatcagaaggatagtgtccagctaactgtgcaggcacct
cccaggaacaccactgttagcatttacccatcagctcatgtgcaagagggtcagaacatc
acgatctgctgccattctgtaagcttcccaccgcctgccatcatgctgaggaagctggac
agtgatgtggacatctactcacctgatggtaccttcctactgatcaacctcactcctaac
gacacgggtctataccaggttaatgttaccaactccctgggctacgagactgaggtcttc
agaattcatgtcatggagacacactccagtcctttcccaagttccacctacttcgtaatt
cctgccatcggtctcggagttctagcctcagtagttggcatgctggagtatctgaggagg
gcgatgaggaagggctcctacgacctgaccgaaagcaaaccgagacctgcgcagactgtg
taa
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