Triplophysa rosa: 130549213
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Entry
130549213 CDS
T09216
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
tros
Triplophysa rosa
Pathway
tros04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130549213 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
tros04090
]
130549213 (vcam1b)
04091 Lectins [BR:
tros04091
]
130549213 (vcam1b)
CD molecules [BR:
tros04090
]
Proteins
130549213 (vcam1b)
Lectins [BR:
tros04091
]
I-type lectins (Siglecs)
130549213 (vcam1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C1-set
C2-set_2
ICAM1_3_5_D2
ICAM_N
Motif
Other DBs
NCBI-GeneID:
130549213
NCBI-ProteinID:
XP_057182415
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Position
LG25:complement(10604701..10613035)
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AA seq
813 aa
AA seq
DB search
MDLTLLVFLLLPVVAASHKVDLPPKVVFKMGDRRELTCSMRSCPGELKFVWTPLEDKPLF
AAVKNKPTESVLIFENVTRNHENTVLCKATCGKETKQAKTTIKVYSFPRNPVISGNDGLI
LGEENVLTCEVSHVYPSEFLEVELLQGDTVLQAKEGEPNTDGLLISHKFKPSSADDGNAV
TCRASLNMDSIPSDGMIRETSGHLSVLSAPHNVRVSGFAAVSLGSGLTLTCEAEGSPEPA
FTWTALKPDGQRVEMGKLRELFVRNVSLTDTGIYRCEVSNRLGSQTADVSVVVKAPPMET
IIEARPQTVLKEGESISIYCKSDRVPVERVVLRLMVDGRETELKTSVGAETTFTLDSVKL
SDSGLYVCEAFNEYGRQRATLSLTVETHLLEVVLQPDGVIVAERGSGHALSCQASGCPQP
TFSWRRLENLPTRGLTETIGFLSQLFLDPVELEDEGTYICEVTCGSVAESKQTEMKLFSF
PTSPVLESSGPSLEGETVRLTCSVRDVFPADIFRITWMDGERELISESGTFSSRPQNLTS
VLSYDIEAKDKDKSITCKVLLDIDGVPAAQAVKTSSTTLSLHYPPRGTRITVSPQVDLKE
GESVSISCLSDSVPVGRVVLRRVVDAIETELKANEGAETSVILPSVDLDDSGLYVCEAFN
QYGSHRDSVQVIVKTPPRNTTVEVLPSSEVQEGQNITICCNSVSFPPPAVVLRKLDSDSV
IYSPDGVFQLINLTPNDTGLYQVNVTNDLGYETEIFLINVKEKRFESPPSWNDFVTAAVC
LGSALALLGIVVYLWRESKKGSYDLTKCNPDTV
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggatttaactttgcttgtgtttttacttcttccagttgttgctgcttcacataaggtg
gacctgccccccaaagttgtgttcaaaatgggcgacaggagggagctgacgtgcagcatg
cgctcgtgcccgggcgagttgaagtttgtttggactccgttagaggacaaaccgctattt
gccgctgttaaaaacaagcccacggagtccgtgctgatcttcgaaaatgtcacgaggaat
cacgaaaacaccgtgctgtgcaaagcgacctgtgggaaggagacgaaacaggcgaaaact
acgattaaagtttattcttttccaagaaacccagtcatatctgggaatgatggcttgata
ctgggtgaagagaacgtcctgacctgtgaagtatctcacgtatacccttcagagttcctt
gaagtagaattgttacaaggagacacggttcttcaggctaaagaaggagaacccaacaca
gatggtctgttgatatctcacaaattcaaaccttcaagtgcggatgatgggaacgccgta
acctgccgagcatcgctcaatatggacagtataccatctgacggaatgataagggaaaca
tctggacacttgagcgttctttctgcacctcataatgtgagagtgtctggatttgctgcg
gtctctctgggatctggtttaactttgacctgtgaggccgagggcagccctgagcctgcg
tttacatggacggccctcaaaccagatggccagcgggttgaaatgggaaaacttcgagag
ctcttcgtgcgcaacgtgtccctgactgatacgggtatttaccggtgtgaagttagcaat
cgattgggaagccaaacggccgacgtttctgttgtcgttaaagcacccccaatggaaaca
atcattgaagcaagaccgcaaacagttctgaaggaaggagagtccataagcatctactgc
aagtccgacagggtcccggtggagcgcgtggttttgagactcatggtggacggccgagaa
acagagctgaagaccagtgttggggctgaaaccacatttacacttgattccgtcaagctg
tctgactctggattgtatgtgtgcgaggctttcaatgagtatggacgtcagagagccact
ctcagtctaaccgttgaaactcatttacttgaagtggtgctacaaccagacggcgtgatc
gtggcagaacgtggctccggtcatgcgctttcctgtcaggcgtcaggttgccctcagccc
acgttctcctggaggcgtcttgagaatctgccgacccgaggcctaacagagaccatcggc
ttcctgtcccagctgttcctcgacccagtggagttggaagacgagggaacttatatctgt
gaggtcacatgtggttcagttgcggagtctaaacagaccgaaatgaagttgttctcattc
cctacaagtccggtcttagaaagttctggaccttctctggagggagagacggtacgcttg
acctgcagcgttcgggatgtttttccagccgacattttccgaattacgtggatggatggg
gagcgagaactcatctcggaatctggaacgttttcaagtcgaccgcagaatctgacttcg
gtgttgtcttatgacatagaagccaaagacaaggacaaatcgatcacctgcaaagtcttg
ttggacattgatggtgtgccggcagcgcaagccgtaaagacatcttcgacaacattgtcc
cttcactatcctcccagaggaaccaggataacggtgagcccacaggtggatttgaaggaa
ggagaatctgtgagcatttcctgtctgtccgacagcgtcccggtgggtcgtgtggtgctg
aggagggtggtggacgctatagaaacagagctgaaggccaatgaaggggctgaaacatca
gttatactcccttccgtcgacctggatgactctgggctgtatgtgtgtgaagcttttaac
cagtatggaagccaccgagacagtgttcaagttattgtgaaaacaccacccagaaatacg
acggtggaggtcttaccatcctctgaggttcaggagggccaaaatatcaccatctgttgt
aactccgtgagctttcctccacctgctgtggtcctcaggaagctggatagcgattctgtg
atctactctcccgatggcgtctttcagttgatcaacctcactccaaacgacacaggcctg
tatcaggtcaacgtcaccaatgacttgggctacgagacggagattttccttattaacgtg
aaggaaaagcgcttcgagtccccaccgagctggaatgattttgtaaccgccgcagtttgc
ctgggatctgcattggcgctacttggcattgtcgtttatctctggagggaaagtaagaag
ggatcgtacgatctcaccaaatgcaatccggacactgtatag
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