Trichoderma reesei RUT C-30: M419DRAFT_25448
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Entry
M419DRAFT_25448 CDS
T06031
Name
(GenBank) DNA-dependent RNA polymerase II beta subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
trr
Trichoderma reesei RUT C-30
Pathway
trr03020
RNA polymerase
trr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M419DRAFT_25448
09124 Replication and repair
03420 Nucleotide excision repair
M419DRAFT_25448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trr03021
]
M419DRAFT_25448
03400 DNA repair and recombination proteins [BR:
trr03400
]
M419DRAFT_25448
Enzymes [BR:
trr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M419DRAFT_25448
Transcription machinery [BR:
trr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
M419DRAFT_25448
DNA repair and recombination proteins [BR:
trr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
M419DRAFT_25448
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-ProteinID:
ETS00980
JGI:
TrireRUTC30_1_25448
UniProt:
A0A024S6L8
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MADYEDDYDYENYGDEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNE
YSTITLDQPNPPSPPGRTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTY
ASPLYIKITKKLSAAVEKEIPLHEMDDAQQEEYARTGEAPTKLEWEEEEAGEDDHNIGKS
EDWKDMVFVGKLPIMVKSKICHLSRETDDSLFLVNECPYDQGGYFVINGSEKVLIAQERS
AANIVQVFKKAQPSAYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLP
FVKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFI
GKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGR
REPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGT
LSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPR
QLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPL
RYPHATKIFVNGVWVGIHQDPKHLVQQVVDTRRKSYLQYEVSLVREIRDQEFKIFSDAGR
VMRPVFTVQQDEESDTGIPKGHLVLTKDLVNKLAQEQAEPPEDPSMKIGWEGLIRAGAVE
YLDAEEEETAMICMTPEDLELYRAQKAGIATEEDVGDDPNKRLKTRTNPTTHMYTHCEIH
PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLG
TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEK
KVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDADTQD
LGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRH
GQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDA
TPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIH
ARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICE
ICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFTDRSGAS
VR
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgaggacgactacgactacgaaaactatggagacgaggacgagggcatc
acccccgaggactgctggaccgtcatctcctccttcttcgagaccaagggcctcgtctcg
cagcagacagactcctttgacgagttcacgcagacgacaatccaggacctcgtaaacgaa
tactccaccatcaccctcgaccagcccaacccgccttcgccgcccggccggacaatagcc
cttcgtcgatatgagatcaagtttggaagcgtcatggtgtcacgccccactatcagtgag
acggacggaaccgtcacctccctgcttccgtacgagtgccgagatcgcaacttgacatac
gccagtccgctgtacattaagattaccaagaaactgtccgccgccgtcgagaaggagatt
ccgttgcacgagatggacgacgcccagcaggaagagtacgcaaggaccggcgaggcccct
acaaagctcgagtgggaggaggaagaggctggcgaagatgaccacaacattggcaagtcc
gaagactggaaggatatggtcttcgtgggcaagctgcccatcatggtcaagtccaagatc
tgtcatttgagtcgcgagaccgacgacagcctgtttctcgtcaacgagtgtccctacgac
cagggcggctactttgttatcaatggcagtgaaaaggtcctcatcgcccaggagagatct
gctgccaacatcgtccaagtgttcaaaaaggcccagcctagtgcctacacctatacggcg
gagattcgaagtgcgctcgaaaagggctcgaggctcatctcaagcatgatgctcaagctg
tacggcaagggagattctgcccgcggaggctttggtcagaccattcacacgaccctgccc
tttgtcaagtcggatcttcctgtcgccattgtcttccgcgccctgggtgtcgtttccgat
gaggacatcctgaaccatatttgctacgaccgaaacgacagtcagatgctggaaatgctt
cggccatgcattgaggaggcgttctgtgtccaggaccgagaggtcgctctggacttcatc
ggaaagcgtggtaaccgagaccaagcgggtctcggccgtgagaagcgtgtccgtgtggcc
aaggatatcctccaaaaggagacgctgcctcacatttcccagacagaaggtagcgagacc
agaaaggccttcttcttgggctacatggtgcacaaactgctgcagtgcgcactcggcaga
agagaacccgacgatcgtgaccactttggaaagaagcggctggacctggcgggtcctctg
ctggccaagctgttccgtggcatcatgcgaagaatgaacaccgagctggccaattatctg
agacggtgcgtggagggcaaccgacacttcaatctcgccgtcggcatcaagcccggcacg
ctttcaaacggcctaaagtactcgctcgccactggaaactggggtgatcagaagaaggcc
atgagctcgaccgcaggtgtgtctcaggtgctcaaccgctacacgtttgcctcgaccctc
tcgcatttgcggcgtaccaacacgcccatcggaagagatggcaagctggcgaagcctcga
cagcttcacaacacccattggggtctcgtctgcccggccgagacacccgaaggacaggcc
tgtggccttgtcaagaacctgtctctgatgtgttatgtcagtgtcggctctccgtcagag
cccttgattgagtttatgatcaataggggcatggaagtggtcgaggaatacgagccactg
cgttatcctcacgcgaccaagatcttcgtcaacggtgtctgggtgggcattcaccaggac
cctaagcatctcgtccagcaggtcgtggacactcgtcgtaaatcctacctgcagtacgag
gtctccctcgtcagagaaattcgagaccaagagttcaagatcttctcggatgctggccgt
gtcatgcgacccgtttttaccgtccagcaagatgaagagtcggacactggcattccaaag
ggccacttggtactgaccaaagacctcgttaataagttggcccaagagcaggccgagccg
ccagaagacccaagcatgaagattggatgggaggggctcatcagggctggtgcggttgag
tatctcgacgccgaggaagaggagacggccatgatttgcatgactcccgaggatctcgag
ctgtatcgtgcccagaaggcaggcattgccaccgaagaggacgtgggcgacgatccgaac
aagcgactcaagacgaggacaaacccaacaacgcacatgtacacgcactgcgagattcat
ccaagcatgatcttgggtatctgcgcgagcatcattcctttccccgatcacaaccagtcc
ccccgtaacacctaccaatctgccatgggtaaacaagccatgggtttcttcctcaccaac
tattcccggcgcatggacaccatggccaacattctctactacccccagaagccgctgggt
acgacccgctctatggagtttttaaagttccgcgagctgccggctggacaaaacgccatt
gtagccattgcttgttactctggctacaaccaggaagattcggtcatcatgaatcagagt
agcatcgacagaggcctcttccgaagtctcttcttccgatcctactcggatcaggagaag
aaggtgggcttgaactacaccgaagtgtttgagaagccgttccaccagaacaccctccgc
atgaagcacggcacatacgacaagctggacgaggacggcatcgtcgctcctggcgtccgt
gtttcaggagaggacatcatcatcggcaagactgcgccgattgacgccgacacgcaagat
ctcggcaccagaactacaatgcaccagaggcgtgatatctcgacacccctgcgcagcacc
gagaacggcatcgtggactctgtcatcgtgacggtcaacgcggacaatgtcaagtatgtc
aaggtccgggtccgcacgaccaagattccgcagattggtgacaagtttgcgtctcgtcac
ggacaaaagggcactattggtgtcacttaccggcaggaggacatgccgttcaccagagag
ggaatcacgcccgacatcatcatcaacccccacgccattccgtctcgtatgacaatcgct
cacttgattgagtgtctcctaagcaaggtctctacgttggagggcatggagggtgatgcg
acaccctttactgatgttacggtcgactcggtctcggagctgctgcgaaagcacggctac
cagtcccgaggcttcgagatcatgtacaatggtcacacgggccgcaagctgagggcccag
gtcttctttggaccaacatactaccagcgacttcgccacatggtggacgacaagatccac
gctcgtgcccgaggtccggtgcagatcatgacgcgacagccggtggagggtcgtgcccga
gacggtggtctccgattcggagaaatggagcgtgattgcatgattgcacacggagccgcg
tccttcctcaaggagcgattgtttgaggtgtctgacgccttccgagttcacatttgcgag
atttgtggactcatgacgcccattgccaacctctccaagcaatcgttcgagtgccggccg
tgcaagaacaagaccaagattgcgcagattcacatcccttatgcggccaagctcttgttc
caggagctccagtcgatgaacattgccgcccgaatgtttactgaccggtccggcgcgtct
gtcaggtaa
DBGET
integrated database retrieval system
