Trichinella spiralis: Tsp_10548
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Entry
Tsp_10548 CDS
T01609
Name
(RefSeq) putative pyridoxal-dependent decarboxylase, pyridoxal binding domain protein
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
tsp
Trichinella spiralis
Pathway
tsp00330
Arginine and proline metabolism
tsp00480
Glutathione metabolism
tsp01100
Metabolic pathways
tsp04148
Efferocytosis
Module
tsp_M00134
Polyamine biosynthesis, arginine => ornithine => putrescine
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
Tsp_10548
09106 Metabolism of other amino acids
00480 Glutathione metabolism
Tsp_10548
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
Tsp_10548
Enzymes [BR:
tsp01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
Tsp_10548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Motif
Other DBs
NCBI-GeneID:
10900770
NCBI-ProteinID:
XP_003372272
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MKIIKHNAPEELFSSFRCLESASFLQNFDLEIVENCSTYKELATLAKAEGVAAQDNGRLV
CFFNIGQLFHQHKLWLKCLPRVKPFYSVRCNGNEALLQILNRLGLSFECKSKACVTEIES
VMKVGVSPEEILYANPCKTAKQVQHAMMRSVRKLVFDNEDELYKVKRFFPTAELILRINV
SDTTTTVLSPNLNFGCDPESQGPSLLVLAMLLDLKVIGISFHVGSNCDDGTLFAEAIAHS
RRLFDYATALGHKMRLLDIGGGFPGQNMAKFQAIADEVNRSLEKHFPTDSGVDVVAEPGR
FYAEKAFTLCCTVIARRTVPANQITKNEADRNSFGYTYSINDGVYGSFNCILCDTGKPMA
TVLKEGREKLYWTSVCGPTDDSLDLVIAQCRMPMLGEGDVIVFENMGAYTFNSESISKPE
MRYVISRNDWQVCLFVQIYGKSRSD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaagattatcaagcacaatgcaccggaagaattgttttcatcttttcgttgcttggaa
agtgcatcatttttgcaaaattttgatttggaaatagtcgaaaattgttcaacttataaa
gaactggcaacactggccaaagccgagggcgtggctgcacaggacaatggcagattggtt
tgctttttcaacatcgggcaattgtttcatcagcataaactctggttgaaatgcttacca
cgcgtgaagccgttttactctgtgagatgtaacggcaacgaagcgttgctgcaaattttg
aacagactgggattgagtttcgaatgcaaaagcaaggcatgtgttaccgaaatagaaagt
gtgatgaaagtgggtgtgtcgccggaagaaatattgtacgcaaatccatgcaaaacagcc
aagcaagttcagcatgcgatgatgcgcagtgtgcgaaaattagtttttgacaacgaagac
gaactgtacaaagtgaaacgtttctttccaactgccgagttgatcttgcgcattaatgtc
tctgatacaacgactactgttctttcgccgaatttgaatttcggttgtgatcctgagagt
caaggtccgtcgttgttggtattagccatgttgcttgatttgaaagttattggcataagt
tttcatgtcggaagcaactgcgacgacgggacactgtttgccgaagcgattgcccattcg
cgccgactgttcgattacgccaccgccctgggacacaagatgagattgttggatattggc
ggcggatttccgggccagaatatggccaaatttcaagcaattgccgacgaggtgaatcgt
agcttggagaaacacttcccgaccgacagtggggtggatgtggttgccgagccgggtcgt
ttttacgccgaaaaagcattcacactctgttgtacagtaattgcccgacgcactgtacct
gcgaatcagattaccaaaaacgaagcggatcgcaattcatttggctacacatacagcatc
aacgatggcgtgtatggctctttcaattgtattctttgcgataccggtaaaccgatggcg
actgtcctaaaagaaggcagagaaaaattgtattggacctctgtttgcggtccaacggac
gatagcttggatttggtgattgcgcagtgcaggatgccgatgctcggagagggggatgtg
atcgtgtttgaaaacatgggcgcgtacacttttaattcagaatcgatttccaagcctgaa
atgcgttatgttatcagtagaaacgattggcaagtttgcctttttgtccaaatttatggg
aaatcacgaagcgactga
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