KEGG   Trichinella spiralis: Tsp_11760
Entry
Tsp_11760         CDS       T01609                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
tsp  Trichinella spiralis
Pathway
tsp03020  RNA polymerase
tsp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tsp_11760
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tsp_11760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_11760
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_11760
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     Tsp_11760
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Tsp_11760
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 10897916
NCBI-ProteinID: XP_003374172
LinkDB
Position
Unknown
AA seq 213 aa
MSSNVGNQYENSDSESDEWQDEKICKVEIDIIQLNDEVIKFSLANTRLSFANCLRRIFIA
ETPCLVHRLGLLPLTSDETVSRMRFARECQCSDHCSECAVQLTLEKQCRDESTHVVSTAD
LKSQDPRVIPLHQFKTDQKNTMHFRLADRNGKLSTKIIIAKLCRGQELNVVCLARKGIGK
EHAKWNPTASVAFEYDPDNALRHTTYPKPEEWY
NT seq 642 nt   +upstreamnt  +downstreamnt
atgtcttcaaacgttggcaaccagtatgagaactccgattcagaaagtgacgaatggcaa
gacgagaaaatatgcaaagtagagatagatattattcagctcaacgatgaagtgatcaaa
ttttcattagcaaataccagactgagctttgctaactgcttgcgtcgaattttcatagcc
gaaacaccatgccttgttcaccgtcttggcttgcttccacttacctcagatgagactgtc
agtcggatgcgttttgccagggaatgtcagtgcagtgatcactgcagcgaatgtgccgtg
caattgactttggaaaaacagtgccgtgatgaaagtacgcacgttgtcagcacggctgat
ttgaaatcccaagatccacgcgtgattccgcttcatcaattcaaaactgaccaaaagaat
acaatgcacttcaggcttgcggatcgcaacggaaagctgtcgacgaaaataattattgcc
aaactgtgccgaggtcaagaattgaacgtcgtctgtttggcccgtaaaggaattggcaaa
gagcatgccaagtggaacccgacggccagtgtcgcatttgagtacgatccggacaacgcg
ctcaggcacacaacatacccgaagcctgaagaatggtattaa

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