Thamnophis sirtalis (common garter snake): 106541972
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Entry
106541972 CDS
T06107
Symbol
GRIN1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04020
Calcium signaling pathway
tsr04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
106541972 (GRIN1)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
106541972 (GRIN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tsr04040
]
106541972 (GRIN1)
Ion channels [BR:
tsr04040
]
Ligand-gated channels
Glutamate (ionotropic)
106541972 (GRIN1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
Motif
Other DBs
NCBI-GeneID:
106541972
NCBI-ProteinID:
XP_013913042
UniProt:
A0A6I9XGP9
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All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MRLLLLAVLVWFSVARAGCEPKIINIGAVLSTKKHEQVFRDAISQANKRHGIWKIQLNAT
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVLGLTT
RMSIYSDKSIHLSFLRTVPPYSHQSNVWFEMMRFYKWNHIILIVSDDHEGRAAQKKLETL
LEEKESKSKKRNYDSLEQLSYDSKRGPKAEKVLQFEPGTKNVTSLLLEAKELEARVIILS
ASEDDATTVYMAAAKENMTGPGYVWLVGEREISGNALRNAPEGLIGLQLMNGKNESAHIR
DAVAVVAQAVHDLFEKENITDPPRGCVGNTNIWKTGPLFKRVLMQTKYAEGVTGRVEFNE
DGDRKYANYSVMNLQNNKLVQVGVYNGSHFLPNDRKIVWPGGETETPQGYEMSTKLKIVT
IHQEPFVYVKPTLADGKCKPLLNSTGGLVQQVLCTGPNETLPGRPSVMLCCYGFCIDLLI
KLAKTMNFTYEVHLVGDGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILNLHENGFMEELDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
VAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQQYQPTDITGQLNLSDPSVSTV
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgctgctgctggccgtgctggtttggttctcggtggcccgcgcgggctgcgag
cccaagatcatcaacatcggcgccgtgctgagcaccaagaagcacgagcaggtcttccgc
gacgccatcagccaggccaacaagcggcacggcatctggaagatccagctgaacgccacc
tccgtcacccacaagcccaacgccatccagatggctctctccgtctgcgaggacctcatc
tccagccaggtttatgccatcttagtgagccacccgccagctccaaatgaccacttgacc
ccaacaccggtgtcttacacagctgggttctatcggattcctgtccttgggctgaccact
cgcatgtccatatattcagataagagcatccacctgtccttcctacgaacggtgcccccc
tactcccaccagtccaacgtctggttcgagatgatgcgcttttacaagtggaaccatatc
atcctcattgtcagcgatgaccacgaggggcgagcggcccaaaagaagctggagaccctc
ttggaagagaaggaatccaagagtaaaaaaaggaactatgacagcctcgaacaactatcc
tatgacagcaagcgaggacccaaggctgagaaggtgcttcagtttgaaccaggaacaaaa
aacgtgacttcactgctgctggaagccaaagaactggaagctcgggtgattatcctctcc
gcaagcgaggacgatgccaccaccgtgtatatggcagcagccaaagaaaacatgactggt
ccgggttacgtatggctggtgggagaaagggagatctcgggcaacgccttgcgcaatgcg
ccagaaggactgattggcctgcagctcatgaacgggaagaacgaatccgctcacatcaga
gacgccgtagccgtggtggcccaggctgtgcacgacttgtttgagaaagagaacatcacg
gaccctccccggggctgtgtggggaacacaaacatctggaagacggggcccctcttcaaa
agggtgctgatgcagaccaaatatgcagaaggcgtgactggccgggtggagtttaacgaa
gacggggacagaaaatatgccaactacagcgtcatgaatctccagaacaacaaactggtg
caagtcggagtctacaacgggagccactttctgcccaatgaccggaagatcgtctggccg
ggaggggagacagaaacgccgcagggctacgagatgtccacgaaactcaagatagtcaca
atccaccaggagccgtttgtctacgtgaagcccaccctggccgacgggaagtgcaagccg
ctgctcaacagcacggggggtctggtgcagcaggtgctctgtacggggcccaatgagacc
ttgccagggcgccccagcgtgatgttatgctgctacggcttctgcatcgatttactcatc
aagctggcgaagacgatgaatttcacctacgaagttcatctagtgggtgacggtaaattt
ggcacgcaagaacgggtgaataacagcaacaagaaggagtggaacgggatgatgggggag
ctgctcagtggccaggctgatatgatcgtggcaccgctgaccattaacaacgagcgggct
cagtacattgagttttccaagccttttaagtaccaaggactgaccatcctcgtcaagaag
gaaattccccgcagcaccctggattcattcatgcaaccgttccagagcaccctatggctc
ctggtggggctgtcggtgcacgtggtggctgtgatgttatacctgctggaccgtttcagt
cccttcggccgattcaaagtgaacagtgaagaagaggaagaggacgccctgacgctttca
tcggccatgtggttttcctggggggtccttctgaactctggcatcggagaaggtgccccg
agaagtttctcagctcggatcctcggcatggtctgggctggtttcgccatgattatcgtg
gcctcttacactgccaacctggctgctttcctggtgttggacaggccggaggaacgaatc
acgggcatcaacgatcctcggttgcgaaacccttcggataagttcatctacgccaccgtg
aagcagagctcggtagacatttatttccggaggcaggtggagctaagcactatgtatcgg
cacatggagaagcacaattacgaaagtgctgccgaagccatccaagctgttcgggacaac
aagctccacgccttcatctgggactcggctgtgctagagtttgaagcctcgcagaagtgt
gacctggtgaccacaggagagctcttcttccgttccggcttcggcatcggcatgcgcaaa
gacagtccatggaagcagaatgtctccctggccatcctgaacctccacgagaacggcttc
atggaagagcttgacaagacttgggtgagatatcaggagtgtgattcccgcagcaatgct
ccggcaacactcaccttcgaaaacatggcaggtgtattcatgctggtggctggaggtatt
gtggccgggatatttttaatattcatagaaatagcatacaaaaggcataaagacgcccgg
aggaaacagatgcaactggcgttcgcggcagttaatgtgtggcggaaaaacctgcagcag
taccaacccaccgacatcactgggcaactcaatctctctgacccctcggtcagcaccgtg
gtgtga
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