Telopea speciosissima (New South Wales waratah): 122642597
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Entry
122642597 CDS
T07910
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122642597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122642597
Enzymes [BR:
tss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122642597
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122642597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Methyltr_RsmF_N
Motif
Other DBs
NCBI-GeneID:
122642597
NCBI-ProteinID:
XP_043692047
LinkDB
All DBs
Position
10:40630087..40702366
Genome browser
AA seq
1456 aa
AA seq
DB search
MAHTTEGATESVEAVHFSFYTDEEVTNLSVKKITNPILLDSVDRPVPDGLYDPALGPSDE
RTSCRSCGQRSFHCPGHCGHIDLVLPVYNPLLFNTLLDILRRACVFCHHFKITKEEVEKY
ATQLELIMKGDIVSAKELDLKNNIMLHVTSSEANNCNPKHWQGHKWTSLQYSEAMSVLSN
FIKQKPKKCQNCTARNPTISSPTSGWIQTRMSDNNIRRNTLKGCKMSQTFSHGGEQKSVT
GEVENANDLPPEFFKQKKFSGGLLLPSDVKDILKLLWENEARLCSLICDIQQESLHMSGK
QASYSIFFIKDLLVPPIKFRPPSKGGDSVMEHPQTVLLGKVLQANISLGNAHLNSSEHSK
IIPRWMDLQQSVNVLFDSKSVTGQKDNIATGICQLLEKKEGIFRQKMMGKRVNYACRSVI
SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRNAVINGAEVHPGATHYADKLATVK
LPPSRKMRISISRKLPSSRGAFTQVGKSLDYEFESKVVYRHLQDGDIVLVNRQPTLHKPS
IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANKQYIV
PTSGDPIRGLIQDHIISAVLLTKRDTFLTLDQYNQLLYSSGVSAAGPGLFNSKLGQKVSI
INSEDEIQPVLPAIWKPKPLWTGKQVITAILNHLTRGQPPFTVEKTGRIPGEYFGSKSGE
ANLLIRENELVHGVIDKAQFGKYGLVHTMQEFYGSDTAGILLSTFSRLFTGFLQMYGFTC
GVDDLLILQHYDMRRSRELEESEKIGEEVHYQFIGCKDQDKDPTELQMEIEKVIRSNGES
AVARLDRMMSSALNKLTSKVNNMLFPAGLLKPFPRNCLSLMTTTGAKGGLVNFTQISSLL
GQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGFINDRFLTGLRPQEYYFHCMAGREGLV
DTAVKTSRSGYLQRCLIKTLECLKVCYDHTVRDADGSVVQFNYGEDGVDAHKTSFITEFK
ALASNQRIIQERIGGELGSASLFRSNGYIKELPDALKAKAKDFISCLSEKEREGLRLMKQ
KDFMKLLKHKYLSSLAEPGEPVGVIAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLQ
EILMRASEKIQTPVMTCPLQKGRTRDEAERLAAKFKKVSVADVIESMEVSVMPFAVKKHQ
ISSIYKLKLKLYPPLIYPPYMDITVKDCMKTIKNKFLRELEDAIQNHLDMLSKISGIKNI
MQTAQSTSAKEAGEDDLGSTSQEVEENNVGGGDADDDEDDDGGGEDLGVDAQKRKRQATD
EMDYEDDMENDILHITEHDEGDPSTGFESEVDQVEAEEGNTTTGEIQVFDADDETPSKAG
SVSKSKSSAKKEKSVIDGKNASSKRRKKDTDRAFHVEAKGLDVEVHFRFTNEPHILLAQV
LFQLVTQRHNAWFNSD
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaccacagagggagcaactgagtctgtagaggcagttcatttcagcttctat
accgatgaggaggttacaaacctgagtgttaaaaagattacaaatcctattctactcgat
agtgtggacagacctgtgcctgatggactgtatgatccggcattgggcccatcggatgaa
aggacgtcttgtagatcttgtggccagcgttcatttcattgtccaggtcattgtggtcat
attgaccttgtattaccagtctacaaccccctactgttcaatactcttcttgatattctc
agaagggcttgtgtattttgtcatcattttaagataacaaaggaagaggttgaaaagtat
gctactcaactggaactaataatgaagggtgacatcgttagtgcgaaagaattagatctc
aaaaacaatatcatgctccatgtgacatcttctgaggcaaataattgcaaccccaagcat
tggcaagggcacaagtggacttcccttcaatatagtgaggcaatgtctgtattgagcaat
ttcatcaaacagaagccaaaaaaatgtcagaactgtacggccagaaatcctacaatcagt
tctcctacttctggttggattcaaacgagaatgtcagacaacaatattagaagaaatact
ttgaaggggtgcaagatgagccagacatttagtcatggaggtgaacagaaatctgttact
ggtgaggtggaaaatgctaatgatttgcctcctgagttctttaagcagaagaaattttct
ggtggactcctcttaccatcagatgtgaaagacattttaaagcttttatgggaaaatgag
gctcggctttgctctcttatatgtgacattcagcaggagagtttgcatatgtctgggaaa
caagctagttactcaattttttttattaaggaccttcttgttcctccaattaagttccgc
ccaccatccaagggtggtgattctgtgatggagcatcctcaaactgttttattaggtaag
gtgctacaggctaatatttctttaggcaatgctcatctcaacagctcagagcattcaaag
atcattcctaggtggatggatcttcaacaatctgtgaatgtattattcgatagcaagagt
gtcacgggtcagaaagacaatattgctactggaatatgtcagttgcttgaaaagaaggag
ggtatatttcgccagaaaatgatgggcaagagggttaattatgcatgtcgttctgtcata
tctccagatccctatttggcagtcaatgaaattggtattcctccttattttgcactgagg
ttaacctatccagagagagtgactccttggaatgttaacaagctgaggaatgctgtcatt
aatggtgctgaggtccatcctggtgctacacattatgcagacaaattggcaactgttaaa
ctaccaccaagtagaaaaatgcgtatttcaatttcgaggaagttaccctcttctagggga
gcttttacacaagttggaaagagtttggattatgaatttgaaagcaaggttgtctatcgt
catttgcaggatggagatattgtacttgttaaccggcagccgactcttcacaagccaagt
ataatggcacatgtagttcgtgtactgaaaggggagaaaacacttcgcatgcattatgca
aattgcagtacttacaatgctgattttgatggtgatgagatgaatgttcattttccacaa
gatgaaatttctcgtgcagaagcttacaacattgtaaatgctaataaacaatacattgtt
ccaaccagtggtgatcccatcagaggcttgattcaggaccatattataagtgctgtgctt
ttgacaaagagggacacatttttaacccttgatcagtacaatcagcttctctacagttct
ggtgtctctgctgctggtccaggtttatttaacagtaaacttggccaaaaagtttcaata
ataaattctgaagatgagatacaacctgtcttgcctgcaatttggaaaccaaagccactg
tggacaggaaaacaggtcattactgcaatactaaatcatttaacaaggggtcaaccacca
tttactgttgaaaagactggaagaattcctggtgaatattttggaagcaagagtggcgaa
gccaatttactaattcgtgaaaacgagcttgtacatggggtaattgacaaggctcaattt
ggaaagtatggtctggttcatactatgcaggagttctatggttcggatacagcaggcatt
cttctttctacatttagtcgcttgtttactgggtttttgcagatgtatgggttcacatgc
ggggtcgacgatcttcttatactacagcattatgacatgagaaggagcagagaacttgaa
gaaagtgaaaaaattggtgaagaggtccattatcagttcattggttgcaaggatcaagat
aaagatcctacggaactgcaaatggagatagaaaaagttatacgcagtaatggagaatct
gcagtggcacgcttggataggatgatgtctagtgctctgaacaaattgacttccaaggtt
aacaatatgttattccctgcagggttactaaaacccttccctaggaactgcctttctctg
atgactactactggtgctaaaggtggtttggttaattttacacaaatatcgtctttgtta
ggtcaacaagagttagaaggtaaacgtgtccctcgtatggtttccgggaagaccttaccc
tgctttcctccttgggattgtgcatctcgcgctggaggttttattaatgatcgtttcttg
accggtcttcgcccccaagaatattactttcattgcatggctggtcgtgaaggtttggtg
gatacagcagtcaaaacttctcgtagtggatacctgcaacgttgccttataaaaactctg
gagtgtctaaaagtctgttatgaccatactgttcgagatgcagatggatctgttgtccaa
ttcaattatggggaagatggggtggatgcccataaaactagcttcatcacagaatttaaa
gcacttgcttccaaccaaaggattattcaagaacgtatcggtggtgaacttgggagtgca
tccttatttagatccaatggatatattaaggagttaccagacgcacttaaagcaaaagca
aaggatttcatttcttgtctttctgagaaggagagagagggtcttcgtctgatgaaacag
aaggatttcatgaagttgttgaaacacaaatacctctcaagtcttgctgagcctggagaa
cctgttggcgtgattgctgctcagtctgtgggagaaccttcaacccagatgacactcaat
actttccattttgctgggcgaggagaaatgaatgttactctgggaatcccacgtttgcaa
gagattctgatgagggcttcagagaaaattcagactcctgttatgacgtgcccattacaa
aagggtaggacaagggatgaagctgagcgtctagctgcaaagttcaaaaaggtatctgta
gcagatgtaattgagagcatggaggtctctgttatgccatttgctgtcaaaaaacaccaa
atctccagtatttataagctgaagttgaagctatatccacctctaatttatcctccttac
atggatattacagtaaaagactgcatgaaaaccataaaaaataaatttctccgggaattg
gaggatgccattcaaaatcatctggacatgctatctaagattagtggcataaaaaacatt
atgcagactgcacaatccacttctgcaaaggaagcaggtgaggatgatctgggcagtaca
tctcaggaagtagaggaaaacaatgttggcgggggtgatgctgatgatgatgaagatgat
gatggtggtggtgaggatctaggtgtcgatgcacagaaaagaaaacgtcaagctacagat
gagatggattatgaggatgatatggaaaatgatatcttgcacattactgaacatgatgaa
ggggatccatccactggctttgaaagcgaagttgatcaagttgaagctgaagaagggaat
actacaactggtgaaattcaggtatttgatgctgatgatgaaaccccatcaaaagctgga
tctgtctccaagtcaaaatcaagtgcgaaaaaggaaaaatcagtaattgatggaaagaat
gccagttcaaaacgaagaaaaaaagacactgacagagcattccatgtggaagctaaggga
ttggacgttgaggtccattttagatttaccaacgaacctcatattttattggcccaggta
cttttccaactggtcactcaaagacataatgcatggtttaactcagattag
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integrated database retrieval system
